All content

Search filter terms
Filter by category
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by group
Filter by wsdl
Results per page:
Sort by:
Showing 8 results. Use the filters on the left and the search box below to refine the results.
Category: Workflow Type: Taverna 2 Tag: xml Licence: by-sa

Workflow Free text search to Concept Wiki URI (4)

Thumb
Free text search of concept wiki using the Openphacts "Map free text to a concept url based on semantic tag" ie /search/byTag. Search for either compounds or targets depending on the input uuid for "searchType" and filter by source authority with the "branch" input

Created: 2013-06-24 | Last updated: 2013-06-24

Credits: User Ian Dunlop User Katy Wolstencroft User Marco Roos User paul groth

Workflow Make XML Parameters (1)

Thumb
Reformats a SNP list with optional p-value into the required XML input for the 'Define Associated Regions and Genes' workflow. Additional parameters can be supplied to add to the XML document.

Created: 2012-02-08 | Last updated: 2012-02-08

Credits: User Paul martin

Workflow EUADR Relationship Extraction Workflow (1)

Thumb
The workflow offers the ability to automatically determine if an ADR and a Drug are co-mentioned in any of the indexed resources. However the actual relationship between a Drug and an ADR can only be determined by referring to the actual resource The co-occurance relationship workflow seeks to automate the search for resources (publications, drug labels) related to ADRs corresponding to a given drug/ adverse event association. To enable this concept profiles for drugs and adverse effects wer...

Created: 2011-07-27 | Last updated: 2012-09-07

Credits: User Bharat Singh

Uploader

Workflow Download Structures from PubChem given che... (1)

Thumb
This workflow takes the input file containing chemical names and returns a single SDF file of structures. The names are searched against pubchem compounds via e-search. If the compound name is found an XML file containing PubChem ID is returned.The max return compound_ID is set to 1 which could be increased. If the compound name is not found then no ID is returned.  The pubchem compound_ID is then used to download structures from PubChem.  

Created: 2011-05-24 | Last updated: 2011-05-24

Credits: User Kalai User Michael Gerlich

Attributions: Workflow Download Entries from PubChem

Workflow XPath Pubmed Ids (2)

Thumb
This workflow takes in a search term (as used in the normal PubMed interface) and retrieves a list of PubMed ids in xml. The xml is then parsed to retrieve a list of PubMed ids

Created: 2011-03-23 | Last updated: 2011-03-30

Credits: User Paul Fisher

Attributions: Workflow XPath Pubmed Ids

Workflow retrive dpas data for all ics instruments ... (1)

Thumb
This workflow demonstrates the standard query where events for a period of time are requested from the HEC service, available instruments for this time come from the ICS and data only for the times of the events are requested from the DPAS. In this version data from only 3 random events (out of the HEC list) will be requested from the DPAS.

Created: 2010-09-14 | Last updated: 2010-09-14

Credits: User Anja Le Blanc

Attributions: Workflow retrive dpas data for all ics instruments for HEC event data

Workflow retrive dpas data for all ics instruments ... (1)

Thumb
This workflow demonstrates the standard query there events for a period of time are requested from the HEC service, available instruments for this time come from the ICS and data only for the times of the events are requested from the DPAS.

Created: 2010-09-14 | Last updated: 2010-09-14

Credits: User Anja Le Blanc

Attributions: Workflow Extracting data from VOTable format by using XPath query Workflow Retrieve all data for all instruments for a given periode of time

Workflow Call VSO web service with HELIO input data (1)

Thumb
  date transformation from 2000-10-02T23:00:00 to 20001002230000 HELIO instrument names as in http://helio-dev.i4ds.ch/xsd/instruments.xsd spitt into source and instrument names; if these pair don't exist only first part (source) is tried.

Created: 2010-08-04 | Last updated: 2010-08-04

Credits: User Anja Le Blanc

Results per page:
Sort by: