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Showing 27 results. Use the filters on the left and the search box below to refine the results.
Category: Workflow Type: Galaxy Licence: by-sa

Workflow Heatmap of read coverages (1)

Galaxy workflow based on deepTools which creates a clustered heatmap of the read coverage. Two BAM files will be used as input and a heatmap will be the output.For more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03

Credits: User Björn Grüning

Workflow Clustered heatmap of signals around the TSSs (1)

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Galaxy workflow based on deepTools which creates a clustered heatmap of signals around the TSS. One bigwig file is needed as input with the signal and an annotation file with your TSS regions. The output will be a heatmap. You can create such a bigwig file with the bamCorrelate toolFor more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03 | Last updated: 2014-04-03

Credits: User Björn Grüning

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Workflow MergePeptides (1)

A example Galaxy pipeline for removing redundancy in peptides within quantitative proteomics analysis.

Created: 2014-03-31 | Last updated: 2014-03-31

Credits: User hindlem

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Workflow Variant discovery and reference correction... (1)

Error identification and error correction of reference genome assembly from deep-seq Illumina reads.

Created: 2013-05-14 | Last updated: 2013-05-14

Credits: User Robsyme

Workflow AnnotationTimes (1)

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This very simple workflow was used in the analysis of the metadata produced by the human annotation phase of the SALAMI (Strucural Analysis of Large Amounts of Music Inforamtion) project.  The input data is the metadata available from http://ddmal.music.mcgill.ca/salami/annotations It produces a histogram of song durations and scatterplot of combined annotation time verus song duration. The fields are   SONG_ID                   Un...

Created: 2012-07-16 | Last updated: 2012-07-16

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Workflow galaxy_101 (2)

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  This is a Galaxy pipeline written using the Galaxy 101 tutorial (https://main.g2.bx.psu.edu/galaxy101). The pipeline involves retrieving genome and SNP data from UCSC for a particular chromosome. These data are integrated in order to find exons with the highest number of SNPs.

Created: 2012-06-13 | Last updated: 2012-06-14

Credits: User Peter Li

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Workflow Preprocessing_Alevin (1)

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Created: 2022-05-16

Credits: User Esther

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Workflow sonnn (1)

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Created: 2021-12-25 | Last updated: 2021-12-25

Credits: User omurkorayguzel

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Workflow RNA-Seq analysis from fastq (1)

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Created: 2020-03-18 | Last updated: 2020-03-18

Credits: User Miriam Payá

Workflow Trim Reads Based on Quality (1)

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Created: 2015-02-28 | Last updated: 2015-02-28

Credits: User jason limberis

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