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Tag: ensembl Group: BioSemantics Privileged Users @ Human Genetics LUMC + collaborators

Pack Functional annotation of SNPs using next-generation ...

Created: 2012-06-26 10:41:38 | Last updated: 2015-09-01 14:31:18

This pack implements the concept profile matching pipeline in the knowledge discovery tool Anni (, and adapts it to interpret the top SNPs from a GWAS. The underlying literature and concept profile databases are the same as the for the current version of Anni (2.1). The pack consists of three main workflows (,, Workflow 2999 returns a ...

12 items in this pack

Comments: 0 | Viewed: 169 times | Downloaded: 17 times


Workflow SNP_ID2EntrezGene_ID (4)

Purpose: The workflow maps a SNP (dbSNP id) to a gene (EntrezGene id). Author comments: The window for gene inclusion can be set using the set_width parameter. This workflow can be used together with other workflows in this pack: for functional gene and SNP annotation and knowledge discovery.

Created: 2012-06-26 | Last updated: 2013-03-11

Credits: User Kristina Hettne User Harish Dharuri

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