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KNIME
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4528?size=60x60 In Insilic...

Workflow Drug-Drug Networks using Matador-DrugBank ... (1)

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These days, Networks of all kinds are all the rage! So here's a trickle contributing to the flood.The workflow generates a network based on Similarity between known drugs based on commonality of their "direct" drug target interactions.The workflow does not provide a comparison between Chemical similarity based network and one based on shared drug targets. It only provides the latter.Other nodes and interfaces to Cytoscape and exported csv can be used to further the network analy...

Created: 2015-09-17 | Last updated: 2015-09-17

Credits: User Insilicoconsulting

Galaxy
Uploader
Avatar Chetan Joshi

Workflow pipeline5 (1)

https://drive.google.com/a/ganitlabs.in/file/d/0B4KdY3xOOGLvY0twenNJWlVRTU0/edit?usp=sharing

Created: 2015-01-09 | Last updated: 2015-01-09

Credits: User Chetan Joshi

Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Decomposed matrix of Gentiana pneumonanthe

Created: 2014-08-28 11:28:44

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file (decomposed matrix) is used in the documentation as example to run the Elsticity and Sensitivity of the Vital rates Workflow.

File type: Excel workbook

Comments: 0 | Viewed: 46 times | Downloaded: 42 times

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Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Elasticity and Sensitivity of the vital rates pack


Created: 2014-08-28 08:56:24 | Last updated: 2014-08-29 14:50:26

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow calculate the Elasticity and Sensitivity of the vital rates. The goal in both cases is to determine which vital rates have the most influence on population growth or λ.

3 items in this pack

Comments: 0 | Viewed: 51 times | Downloaded: 38 times

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Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Calculate and Plot abundance over the years pack


Created: 2014-08-22 07:50:23 | Last updated: 2014-08-28 13:17:48

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow calculates and plots the abundance per stage per year from a list of matrices.

3 items in this pack

Comments: 0 | Viewed: 47 times | Downloaded: 26 times

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Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Log-log plots of variance vs. sensitivity and CV vs....

Created: 2014-08-21 09:16:10

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Francisco Quevedo User Gerard Oostermeijer

Attributions: Workflow Log-log plots of variance vs. sensitivity and CV vs. elasticity in matrix elements

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.This workflow creates log-log plots of both variance vs. sensitivity and CV vs. elasticity in matrix elements. Plots are based on Figure 2 in Pfister (1998).

File type: Adobe PDF

Comments: 0 | Viewed: 42 times | Downloaded: 33 times

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Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Log-log plots of variance vs. sensitivity ... (1)

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This workflow creates log-log plots of both variance vs. sensitivity and CV vs. elasticity in matrix elements. Plots are based on Figure 2 in Pfister (1998). This workflow calculates as well the summary mean, variance, CV, sensitivities and elasticities of each matrix element of the submitted matrices. Please if you want to know more about this analyses please refer to: Pfister, C.A. 1998. Patterns of variance in stage-structured populations: Evolutionary predictions and ecological implica...

Created: 2014-08-21

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Francisco Quevedo User Gerard Oostermeijer

Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Life Table Response Experiments Fixed design year ef...

Created: 2014-08-21 08:05:38

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Francisco Quevedo User Gerard Oostermeijer

Attributions: Workflow Life Table Response Experiment year effect for multiple places

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Life Table Response Experiments Year Effect for Multiple Places workflow provides an environment to analyse two or more matrices (e.g., two or more matrices of different years from one place) at two or more different locations. The objective of this workflow is to determine the effects of the research years (2 or more) on λ. This workflow performs a fixed LTRE, o...

File type: Adobe PDF

Comments: 0 | Viewed: 45 times | Downloaded: 42 times

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Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Life Table Response Experiment year effect... (1)

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The Life Table Response Experiments Year Effect for Multiple Places workflow provides an environment to analyse two or more matrices (e.g., two or more matrices of different years from one place) at two or more different locations. The objective of this workflow is to determine the effects of the research years (2 or more) on ?. This workflow performs a fixed LTRE, one way design (Caswell 2001). LTRE is a retrospective analysis (Caswell 1989), beginning with data on the vital rates and on ?...

Created: 2014-08-21

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Francisco Quevedo User Gerard Oostermeijer

Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Mean matrix documentation

Created: 2014-08-14 17:52:17 | Last updated: 2014-08-28 13:50:22

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Francisco Quevedo User Gerard Oostermeijer

Attributions: Workflow Mean matrix

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.This workflow estimates the mean matrix from a list of matrices.

File type: Adobe PDF

Comments: 0 | Viewed: 38 times | Downloaded: 33 times

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