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Tag: provenance Licence: by-sa

Workflow Visualize PAV provenance as SVG (1)

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VoID descriptions are fetched as Turtle, cleaned up to be valid OWL ontology and include useful labels, processed through the OWL reasoner Pellet; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox, generating an SVG visualization of the provenance. Note that this workflow downloads CWM, Pellet and ProvToolbox on demand, and uses UNIX command line tools like wget and md5 which are unlikely to work in Windows. This workflow has been tested on Ubuntu 12.10 wit...

Created: 2014-05-08

Credits: User Katy Wolstencroft User Aleksandra Pawlik

Workflow PubMed Search and Solr storage (5)

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Based on the work of Fisher: This workflow takes in a search term, are passed to the eSearch function and searched for in PubMed. I extended by removing outputs and text extraction and addded an automatic Solr storage process using a post.jar, specified by the user. Before running this workflow, make sure that a solr server is up and running and the variable attached to the SolrImport process contains the correct path. Dependencies: - Solr

Created: 2013-07-25 | Last updated: 2013-08-26

Credits: User Sander van boom

Attributions: Workflow PubMed Search

Blob Visualization of ChemSpider VoiD provenance

Created: 2013-04-05 09:23:22 | Last updated: 2013-04-05 10:40:18

Credits: User Stian Soiland-Reyes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

SVG visualization of the PAV provenance from the ChemSpider VoID descriptor example. See Pack 418.Note that this file has been made with PROV Toolbox 0.1.2 as 0.1.3 does not show shortened labels as here.

File type: image/svg+xml

Comments: 0 | Viewed: 36 times | Downloaded: 12 times

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Blob Provenance traces of the Gene To Pathway Taverna Wor...

Created: 2012-08-06 10:58:38

Credits: User Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

  This is the provenance trace in Janus of the Tavrerna workflow that retrieves the pathways associated with given kegg gene identifier.

File type: RDF data

Comments: 0 | Viewed: 24 times | Downloaded: 15 times

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Blob Provenance traces of the Gene To Pathway Taverna Wor...

Created: 2012-08-06 10:57:37

Credits: User Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is the provenance trace in provo of the Tavrerna workflow that retrieves the pathways associated with given kegg gene identifier.

File type: ZIP archive

Comments: 0 | Viewed: 30 times | Downloaded: 24 times

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Blob Janus provenance graph (RDF)

Created: 2010-06-08 23:02:53 | Last updated: 2010-06-09 22:48:46

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

RDF instance file containing the entire provenance graph for once run of the PC1 mockup workflow. The RDF graph complies with the Janus ontology, which can be viewed here Caveat: implementation still under testing, file may still contain bugs  

File type: RDF data

Comments: 0 | Viewed: 56 times | Downloaded: 36 times

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Workflow myFirstLinearDataflow (1)

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Created: 2010-04-12

Credits: User Paolo

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