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Tag: bioinformatics

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Kepler

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Wdsnellg

Extract Gene Sequence with Kepler (1)

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This is a workflow which allows one to extract gene sequence information using the accession number as the input. Multiple outputs include a file output of sequence header information, as well as one output window of base pair count, ratios and gene sequence.

Created: 2011-10-05 | Last updated: 2011-10-05

Credits: Wdsnellg

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Wdsnellg

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Extract Gene Sequence Information with Kepler

Created: 2011-10-05 04:58:33 | Last updated: 2011-10-05 06:11:56

This workflow and pack were designed for a class project. The Kepler based workflow allows one to extract specific information from a gene sequence by using the accession ID as input. By using two web services created for the DNA Data Bank of Japan (DDBJ, http://www.xml.nig.ac.jp/wabi/Method?serviceName=DDBJ&mode=methodList&lang=en), one can extract the sequence header information as an output file, as well as retrieve the sequence, base pair count, and base pair ratios in...

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