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Tag: example Group: myGrid
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Pack Taverna 1.7 starter pack


Created: 2008-07-17 21:06:12 | Last updated: 2018-01-28 19:42:32

Everything to get started with Taverna 1.7 - latest version is 1.7.2

19 items in this pack

Comments: 0 | Viewed: 704 times | Downloaded: 242 times

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Pack Taverna 2.5 Enterprise Starter Pack


Created: 2014-04-02 12:54:33 | Last updated: 2017-01-09 12:01:51

This is a Starter Pack for Taverna 2.5 Enterprise edition - it contains a number of example workflows to showcase various features of Taverna 2.5 Enterprise and help you get started using it.Workflows from this Starter pack can also be found in the myExperiment perspective of the Taverna Workbench.Tutorials for Taverna are available under the Taverna 2.x documentation on the Taverna Web site.Also check out the Taverna User Manual.

18 items in this pack

Comments: 1 | Viewed: 189 times | Downloaded: 156 times

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Pack Taverna 2.4 starter pack


Created: 2012-03-18 13:43:06 | Last updated: 2013-10-08 12:49:44

Taverna 2.4.0 Workbench and Command Line Tool released   The Taverna team are pleased to announce that Taverna 2.4.0 Workbench and the Command Line Tool are now available for download.   Here are a number of new features in the Workbench: Text Constant service allowing easier entry of large textual values Greater control over what is return from REST service Ability to use all the example values for a workflow run with one button Easier annotation of serv...

20 items in this pack

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Pack Taverna localworker example pack


Created: 2008-09-27 17:57:39 | Last updated: 2012-03-05 11:33:29

A pack of examples of the calling of Taverna's localworkers. The example workflows make extensive use of the default value mechanism for associating a value with a port of a service.  An alternative set of workflows that use string constants to make the values more explicit is under development.

103 items in this pack

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Workflow Dummy example of looping (3)

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Example of looping over asynchronous services. The dummy beanshell scripts represents the operations of an asynchronous submit-status-results style service, such as EBI's InterProScan and NCBI Blast. createJob creates a temporary file with the content "0". Filename retuirned as a "job ID". checkStatus reads the job, and return state "RUNNING" as long as the content is less than 10, increasing the number for each call. (As no actual job is being run) getResults reads the file content, with...

Created: 2010-01-27 | Last updated: 2013-10-08

Credits: User Stian Soiland-Reyes

Workflow Execute cmd line app - unix - /bin/ls -R o... (1)

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Note that this workflow only works on Unix systems. The get_temporary_directory beanshell returns the path to the directory in which temporary files are held. This value is passed to the create_and_populate_list beanshell which creates a list of '-R' and the path. The resultant list is passed to the args port of the Execute_cmd_line_app service. The command port of that service has been defaulted to '/bin/ls'. The execute_cmd_line_app service runs the /bin/ls -R command on the temporary ...

Created: 2008-09-27

Credits: User Alan Williams

Workflow Execute cmd line app - unix - /bin/ls of t... (1)

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Note that this workflow only works on Unix systems. The get_temporary_directory beanshell returns the path to the directory in which temporary files are held. This value is passed to the args port of the execute_cmd_line_app service. The command port of that service has been defaulted to '/bin/ls'. The execute_cmd_line_app service runs the /bin/ls command on the temporary directory. The result is passed to its result port and then to the out port of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Extract elements from a list - single elem... (1)

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The extract_elements_from_a_list is passed the list ['a','b','c','d','e']. The fromIndex is 2 and the toIndex is 3, so the service outputs the single element list ['c'].

Created: 2008-09-29

Credits: User Alan Williams

Workflow Extract elements from a list - full extrac... (1)

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The extract_elements_from_a_list is passed the list ['a','b','c','d','e']. The fromIndex is 0 and the toIndex is 5, so the service outputs an identical list.

Created: 2008-09-29

Credits: User Alan Williams

Workflow Test always fails - no parameters (1)

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The test always fails service generates a service failure when no parameter values are supplied.

Created: 2008-09-27

Credits: User Alan Williams

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