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Tag: example Licence: by-sa

Workflow EBI_InterproScan_broken (1)

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This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text and xml. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration. Note that this workflow is deliberately broken

Created: 2014-07-09

Credits: User Alan Williams User Katy Wolstencroft User Hamish McWilliam

Attributions: Workflow EBI_InterproScan_NewServices

Creator

Pack Taverna 2.5 Bioinformatics Starter Pack


Created: 2014-04-02 12:44:47 | Last updated: 2017-01-09 13:08:53

This is a Starter Pack for Taverna 2.5 Bioinformatics edition - it contains a number of example workflows to showcase various features of Taverna 2.5 Bioinformatics and help you get started using it.Workflows from this Starter pack can also be found in the myExperiment perspective of the Taverna Workbench.Tutorials for Taverna are available under the Taverna 2.x documentation on the Taverna Web site.Also check out the Taverna User Manual.

18 items in this pack

Comments: 0 | Viewed: 49 times | Downloaded: 15 times

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Creator

Pack Taverna 2.5 Biodiversity Starter Pack


Created: 2014-04-02 12:40:42 | Last updated: 2017-01-09 13:09:17

This is a Starter Pack for Taverna 2.5 Biodiversity edition - it contains a number of example workflows to showcase various features of Taverna 2.5 Biodiversity and help you get started using it.Workflows from this Starter pack can also be found in the myExperiment perspective of the Taverna Workbench.Tutorials for Taverna are available under the Taverna 2.x documentation on the Taverna Web site.Also check out the Taverna User Manual.

14 items in this pack

Comments: 0 | Viewed: 48 times | Downloaded: 7 times

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Workflow PDF Read (1)

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Read a PDF from a URL

Created: 2014-01-24

Credits: User Robert Haines User Alan Williams

Workflow Blast_Align_and_Tree (2)

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This workflow accepts a protein sequence as input. This sequence is compared to others in the Uniprot database, using the NCBI BLAST Web Service from the EBI (WSDL), and the top 10 hits are returned (Nested workflow:EBI_NCBI_BLast). For each extracted hit, the Uniprot REST service returns the protein sequence in FASTA format. The workflow concatenates the 10 protein sequences and submits them as input to the EBI CLustalw service (Nested workflow EMBL_EBI_clustalw2_SOAP). These sequences are ...

Created: 2013-01-28 | Last updated: 2013-01-30

Credits: User Katy Wolstencroft User Hamish McWilliam

Attributions: Workflow Protein_search_fetch_align_tree

Workflow Write file to S3 bucket (1)

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This workflow simply writes a text file to an AWS S3 bucket. It is provided as an example of how to do this, rather than be a complete, reusable solution. You need to have s3fs installed and configured with your AWS credentials to use this workflow (see http://code.google.com/p/s3fs/).

Created: 2012-08-23

Credits: User Robert Haines

Attributions: Workflow Read file from S3 bucket

Workflow Read file from S3 bucket (1)

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This workflow simply loads a text file that is stored in an AWS S3 bucket. It is provided as an example of how to do this, rather than be a complete, reusable solution. You need to have s3fs installed and configured with your AWS credentials to use this workflow (see http://code.google.com/p/s3fs/).

Created: 2012-08-23

Credits: User Robert Haines

Workflow Watershed (2)

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Local machine example

Created: 2012-05-21 | Last updated: 2012-05-21

Credits: User Jorgejesus

Workflow BiomartAndEMBOSSMouseRat (1)

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This workflow retrieves all genes on human chromosome 22 that are associated with a disease and aligns the upstream regions of the mouse and rat homologues. The alignments are plotted and corresponding sequence ids are also returned.

Created: 2012-04-05

Credits: User Alan Williams

Workflow BiomartAndEMBOSSMouseRat (1)

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This workflow retrieves all genes on human chromosome 22 that are associated with a disease and aligns the upstream regions of the mouse and rat homologues. The alignments are plotted and corresponding sequence ids are also returned.

Created: 2012-04-05

Credits: User Katy Wolstencroft

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