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User: Katy Wolstencroft Licence: by-sa

Blob Bozeman Tutorial

Created: 2012-08-22 09:59:37

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial is an introduction to designing and using Taverna workflows and myExperiment. It was created for the workshop "Making Sense of Biological Systems:Using Knowledge Mining to Improve and Validate Models of Living Systems", at Montana State University Aug 2012

File type: PowerPoint presentation

Comments: 0 | Viewed: 54 times | Downloaded: 65 times

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Blob Getting Started with Taverna - an NGS tutorial

Created: 2012-05-23 14:53:24 | Last updated: 2012-05-30 08:48:19

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial is an introduction to using Taverna, using an example from Chip-Seq analysis

File type: PowerPoint presentation

Comments: 0 | Viewed: 79 times | Downloaded: 82 times

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Workflow SNP Position Information (1)

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This workflow extracts information about the position of SNPs and the genes they are associated with, using BioMart (ENSEMBL Variation 66).

Created: 2012-04-17 | Last updated: 2012-04-17

Credits: User Katy Wolstencroft

Blob Taverna Tutorial Chip-Seq Downstream analysis

Created: 2012-01-17 13:26:09

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a tutorial to introduce the use of Taverna for Next Gen sequence analysis

File type: PowerPoint presentation

Comments: 0 | Viewed: 50 times | Downloaded: 57 times

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Blob Advanced exercises for Next Gen Taverna tutorial

Created: 2012-01-16 16:56:02 | Last updated: 2012-01-17 16:00:23

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

These exercises highlight some of the more advanced features of the Taverna engine, for example, looping, iteration and retries

File type: PowerPoint presentation

Comments: 0 | Viewed: 40 times | Downloaded: 50 times

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Workflow Reactome pathways (1)

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This workflow returns a list of pathways gene products are involved in, along with their descriptions and Gene Ontology annotations

Created: 2012-01-16

Credits: User Katy Wolstencroft

Workflow Import and convert gene list (1)

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This workflow extracts a column of RefSeq gene IDs from a CSV file and then converts them to Unigene identifiers

Created: 2012-01-15 | Last updated: 2012-03-12

Credits: User Katy Wolstencroft

Blob Galaxy Chip-Seq Gene List

Created: 2012-01-12 12:50:30 | Last updated: 2012-01-12 12:50:31

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of genes associated with Chip-Seq peaks. It is part of a Galaxy-Taverna Next Gen Sequencing tutorial

File type: Excel workbook

Comments: 0 | Viewed: 42 times | Downloaded: 192 times

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Blob BioVel Taverna Tutorial

Created: 2011-12-05 11:07:46 | Last updated: 2011-12-05 11:07:49

Credits: User Katy Wolstencroft User Alan Williams User Robert Haines User Biomobst

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial gives an introduction to Taverna, myExperiment and BioCatalogue, using a case study from ecological niche modelling.

File type: PowerPoint presentation

Comments: 0 | Viewed: 65 times | Downloaded: 163 times

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Workflow FetchandDisplaySpecies (3)

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This workflow uses GBIF to search and report species occurrence data and then displays them on Google Earth. An interactive step then allows you to alter the co-ordinates of data displayed.

Created: 2011-11-27 | Last updated: 2011-11-29

Credits: User Alan Williams

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