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User: Katy Wolstencroft Licence: by-sa Group: Bonn workshop 2012

Workflow BiomartAndEMBOSSDisease (4)

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This workflow retrieves all genes on human chromosome 22 that are associated with a disease and aligns the upstream regions with mouse and rat homologues. The alignments are plotted and corresponding sequence ids are also returned. Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2011-01-27 | Last updated: 2012-09-04

Credits: User Katy Wolstencroft User Alan Williams

Attributions: Workflow BiomartAndEMBOSSAnalysis

Blob Bonn Tutorial REST services

Created: 2012-09-03 19:34:12

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a brief introduction to using REST servicces through Taverna

File type: PowerPoint presentation

Comments: 0 | Viewed: 45 times | Downloaded: 42 times

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Blob Bonn Tutorial Different Service Types

Created: 2012-09-03 19:32:32

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thie tutorial introduces you to using different types of services with Taverna - e.g. asynchronous, biomart and soaplab

File type: PowerPoint presentation

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Blob Bonn Taverna Shims

Created: 2012-08-30 14:18:06

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to finding, using and designing Shim services for Taverna workflows

File type: PowerPoint presentation

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Blob Bonn Taverna WF Engine

Created: 2012-08-30 14:15:51

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to using the advanced features of the Taverna workflow engine, such as iterations, looping etc

File type: PowerPoint presentation

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Blob Bonn Taverna Intro Tutorial

Created: 2012-08-30 14:11:55

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to designing, combining and sharing workflows with Taverna and myExperiment

File type: PowerPoint presentation

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Workflow SNP Position Information (1)

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This workflow extracts information about the position of SNPs and the genes they are associated with, using BioMart (ENSEMBL Variation 66).

Created: 2012-04-17 | Last updated: 2012-04-17

Credits: User Katy Wolstencroft

Blob Workflow Assignment Instructions

Created: 2012-09-05 08:20:34

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint presentation

Comments: 0 | Viewed: 24 times | Downloaded: 25 times

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