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User: Mutanthumb Licence: by-sa
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Blob modified_gbk.xml

Created: 2011-10-06 04:15:08 | Last updated: 2011-10-06 04:15:09

Credits: User Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is "clipped" down version of the output from the Read_GenBank_File service.

File type: XML

Comments: 0 | Viewed: 18 times | Downloaded: 610 times

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Workflow Get Element ID from Gzipped GenBank file (1)

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This workflow gunzips a *.gbk.gz file, converts it to XML (via agavewriter) and finds the Element ID. Does not work on *.gz files larger than 10MB. I upped the JVM settings on Taverna to:         <key>VMOptions</key>         <string>-Xmx4096m -XX:MaxPermSize=1024m</string> Created my own agave.dtd to get the XPath service to work the XML file generated from the Read_GenBank_File service. You will need to ...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: User Mutanthumb User Alan Williams

Uploader

Blob NCBI_Entity.mod.dtd

Created: 2011-10-06 03:51:57

Credits: User Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file is called by my version of the agave.dtd file, needs to be saved locally in the Taverna folder: Default location a Mac: /Applications/Taverna 2.3.0.app/Contents/Resources/Java

File type: Trident (Package)

Comments: 0 | Viewed: 15 times | Downloaded: 8 times

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Blob INSD.mod.dtd

Created: 2011-10-06 03:49:45 | Last updated: 2011-10-06 04:06:07

Credits: User Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file is required for converting the GenBank gbk file into an XML. This file needs to be save to Taverna folder: (Default location on Mac): /Applications/Taverna 2.3.0.app/Contents/Resources/Java

File type: Trident (Package)

Comments: 0 | Viewed: 13 times | Downloaded: 10 times

This File has no tags!

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Blob agave.dtd

Created: 2011-10-06 03:48:27 | Last updated: 2011-10-06 04:05:28

Credits: User Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file is required for converting the GenBank gbk file into an XML. This file needs to be save to Taverna folder: (Default location on Mac): /Applications/Taverna 2.3.0.app/Contents/Resources/Java

File type: Trident (Package)

Comments: 0 | Viewed: 11 times | Downloaded: 8 times

This File has no tags!

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Blob TestGzippedGbk4

Created: 2011-10-06 03:21:52 | Last updated: 2011-10-06 04:00:24

Credits: User Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a test file to be used on my workflow. gbk.gz

File type: application/x-gzip

Comments: 0 | Viewed: 15 times | Downloaded: 13 times

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Blob TestGzippedGbk1

Created: 2011-10-06 01:23:35

Credits: User Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File used for testing my workflow.

File type: application/x-gzip

Comments: 0 | Viewed: 15 times | Downloaded: 10 times

This File has no tags!

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Workflow Kepler Comic (1)

This Kepler workflow displays an image when a URL is supplied. Based on DisplayImage by Matt Jones

Created: 2011-09-28 | Last updated: 2011-09-28

Credits: User Mutanthumb

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Workflow Absolute Value (1)

This Kepler workflow does this basic calculation: 3 + 5 */ 3 + - 5 then take the absolute value of the whole mess   Based on BasicAddition by Matt Jones

Created: 2011-09-28 | Last updated: 2011-09-28

Credits: User Mutanthumb

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Workflow Hello Hipster (1)

This is a Kepler workflow which modifies the usual Hello World to show LoremHipster text instead. Based on "Hello World" by Matt Jones

Created: 2011-09-28 | Last updated: 2011-09-28

Credits: User Mutanthumb

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