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Showing 73 results. Use the filters on the left and the search box below to refine the results.
User: Peter Li
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Workflow Construction of skeleton SBML model using ... (1)

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This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given list of yeast enzymes ORF numbers

Created: 2010-03-26 | Last updated: 2010-03-26

Credits: User Peter Li

Creator

Pack Systematic integration of experimental data and mode...


Created: 2010-03-25 20:31:36 | Last updated: 2010-03-26 17:23:44

 A pack of workflows for the construction, parameterisation, optimisation and simulation of SBML models.

5 items in this pack

Comments: 0 | Viewed: 61 times | Downloaded: 0 times

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Workflow Sage bionetwork demo workflow (1)

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This workflow performs key driver analysis and displays the results in Cytoscape.

Created: 2010-03-22

Credits: User Peter Li

Uploader

Workflow Invocation of Gene Pattern modules using R (1)

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 A workflow to invoke a Gene Pattern module using an R script. Note that a FTP URL for the data to be analysed is required, not the data itself!

Created: 2010-03-19 | Last updated: 2010-03-19

Credits: User Peter Li

Uploader

Workflow Visualise KDA output data with Cytoscape (2)

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This workflow retrieves a data file on a web server directory and launches Cytoscape to visualise it.

Created: 2010-03-18 | Last updated: 2010-03-18

Credits: User Peter Li

Uploader

Workflow Log out from Alitora system (1)

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A nested workflow to be used for logging out of Alitora

Created: 2010-03-17 | Last updated: 2010-03-17

Credits: User Peter Li

Uploader

Workflow Log into Alitora system (1)

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A nested workflow to be used for logging into Alitora

Created: 2010-03-17

Credits: User Peter Li

Uploader

Workflow Calculating frequencies of gene expression... (1)

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This workflow retrieves data from the MaxD microarray database and calculates the frequencies of gene expression levels using an R script

Created: 2010-03-15

Credits: User Peter Li

Uploader

Workflow Visualize PAV provenance as SVG (1)

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VoID descriptions are fetched as Turtle, cleaned up to be valid OWL ontology and include useful labels, processed through the OWL reasoner Pellet; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox, generating an SVG visualization of the provenance. Note that this workflow downloads CWM, Pellet and ProvToolbox on demand, and uses UNIX command line tools like wget and md5 which are unlikely to work in Windows. This workflow has been tested on Ubuntu 12.10 wit...

Created: 2014-05-20

Credits: User Peter Li

Uploader

Workflow Gene enhancer region analysis (1)

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 This Galaxy pipeline searches for transciption factor binding sites which are conserved through to Fugu. It then finds genes associated with these enhancer binding sites. See http://screencast.g2.bx.psu.edu/MAF_manipulation for the screencast that describes how this workflow is developed.

Created: 2012-06-14 | Last updated: 2012-07-06

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