All content

Search filter terms
Filter by category
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by group
Filter by wsdl
Results per page:
Sort by:
Showing 40 results. Use the filters on the left and the search box below to refine the results.
User: Magnus Palmblad Licence: by-sa

Workflow Online PubMed author search and geographic... (2)

Thumb
This workflow retrieves bibliographic data for a single author using the PMC Europe RESTful Web service and visualizes the geographic distribution of this author's and their co-authors' geographic distribution using the rworldmap package. This is version 2.0 of this workflow, incorporating changes to the Web service allowing up to 1,000 records to be retrieved at once, using the pageSize parameter.

Created: 2015-08-19 | Last updated: 2015-09-07

Credits: User Magnus Palmblad User Arzu Tugce Guler

Uploader

Blob Former countries

Created: 2015-05-05 12:43:01

Credits: User Magnus Palmblad User Arzu Tugce Guler

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File for mapping former countries to successor states using the ISO 3166 standards.

File type: Excel workbook

Comments: 0 | Viewed: 20 times | Downloaded: 12 times

This File has no tags!

Uploader

Blob ISO 3166-1 and ISO 3166-3

Created: 2015-05-05 12:39:15

Credits: User Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The ISO 3166-1 and ISO 3166-3 country codes

File type: Excel workbook

Comments: 0 | Viewed: 21 times | Downloaded: 27 times

This File has no tags!

Workflow compare_pubmed_results_geographically (1)

Thumb
This workflow analyzes the scientific output, as documented by PubMed, geographically. The workflow takes as input the PubMed data in XML and the ISO 3166-1 and ISO 3166-3 country lists. The XML file can contain any subset from a specific PubMed search. The XPath components extract author affiliations, and feed these to a series of Beanshell components that match these with countries in the ISO standard. This data is then fed to an Rshell using the rworldmap R package to map the affiliation ...

Created: 2015-05-05 | Last updated: 2015-05-05

Credits: User Magnus Palmblad User Arzu Tugce Guler Network-member Bibliometrics and Scientometrics

Attributions: Blob ISO 3166-1 and ISO 3166-3 Blob Former countries

Workflow connect to WoS Web services lite concept (1)

Thumb
This workflow is a concept for how Taverna could connect to the Thomson Reuters Web of Science (WoS) Web services lite. However, at this moment (2015-01-20), the authentication generate a session ID, but the other services (here search and closeSession) do not have an input port for this session ID. According to the documentation, this is required. The error message from the Web service also show this is missing. This workflow is "work in progress", but may nevertheless be of interest to an...

Created: 2015-01-20 | Last updated: 2015-08-19

Credits: User Magnus Palmblad User Arzu Tugce Guler User Cathelijn Waaijer

Uploader

Blob LabVIEW Equivalent of Tutorial 1 Workflow

Created: 2014-05-05 11:39:35

Credits: User Magnus Palmblad

Attributions: Workflow Tutorial 1 Workflow

License: Creative Commons Attribution-Share Alike 3.0 Unported License

What is it?This is a LabVIEW equivalent of the 2014 LUMC Taverna Tutorial (a Taverna version is available at http://www.myexperiment.org/workflows/4254.html) created by Dr. David Kilgour. The workflow is an executable that only requires the free (gratis) LabVIEW Run-Time Engine. Why do we share this?The workflows demonstrates the capabilities in Taverna and LabVIEW, and may be of assistance for people who are familiar with one system who wish to get an idea about the other. This is the f...

File type: application/binary

Comments: 0 | Viewed: 55 times | Downloaded: 10 times

This File has no tags!

Workflow Make Groups for Tutorial (2)

Thumb
The workflow pairs people from two groups of equal size into the same number of pairs with one member from each group. This is done randomly, using the random.org randomization engine, which in turn is based on atmospheric radio noise.

Created: 2014-04-16 | Last updated: 2015-10-12

Credits: User Magnus Palmblad

Workflow Tutorial 1 Workflow (2)

Thumb
Fetch and combine transcriptomics and proteomics data from NSC11 cells in GEO and PRIDE respectively. Apply spectral counting on the proteomics data. The workflow demonstrates how to combine data from different domains (here microarray- based transcriptomics and mass spectrometry-based proteomics) and do something useful with the data. The workflow also demonstrates spreadsheet import and XPath parsing of XML data. This workflow is for tutorial/educational use only. The cells were not grown...

Created: 2014-04-16 | Last updated: 2014-04-16

Credits: User Magnus Palmblad

Workflow Tutorial_1_start (1)

Thumb
This partial workflow is the starting point for Taverna tutorial held at the Leiden University Medical Center on April 17, 2014.

Created: 2014-04-16

Credits: User Magnus Palmblad

Workflow RTCalc Retention Time Prediction and Outli... (1)

Thumb
This workflow takes as input a pepXML file from PeptideProphet, applied RTCalc and outputs a filtered list of peptides based on the retention time Z-scores.

Created: 2014-02-06 | Last updated: 2014-02-06

Credits: User Magnus Palmblad User Sonja Holl

Results per page:
Sort by: