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User: Stian Soiland-Reyes Licence: by

Workflow Dummy example of looping (3)

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Example of looping over asynchronous services. The dummy beanshell scripts represents the operations of an asynchronous submit-status-results style service, such as EBI's InterProScan and NCBI Blast. createJob creates a temporary file with the content "0". Filename retuirned as a "job ID". checkStatus reads the job, and return state "RUNNING" as long as the content is less than 10, increasing the number for each call. (As no actual job is being run) getResults reads the file content, with...

Created: 2010-01-27 | Last updated: 2013-10-08

Credits: User Stian Soiland-Reyes

Workflow REST access of xml.nig.ac.jp (WABI) (1)

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This workflow has a beanshell script for composing the REST URL for the services at xml.nig.ac.jp  (WABI) This URL is passed to the local worker Get_web_page_from_URL that fetches the requested data. Note: This is a proof of concept of accessing REST services through Taverna. All of WABI's services can more easily be browsed and used in Taverna by adding their WSDL, for instance http://xml.nig.ac.jp/wsdl/GetEntry.wsdl The example invokes the getDDBJEntry(accession) method of the getE...

Created: 2008-10-14 | Last updated: 2008-10-14

Credits: User Stian Soiland-Reyes

Blob Workflow run bundle of helloabcd

Created: 2016-03-16 00:57:14

Credits: User Stian Soiland-Reyes

Attributions: Workflow Hello abcd

License: Creative Commons Attribution 3.0 Unported License

See https://gist.github.com/stain/fa63a3527bd09be2a42d

File type: ZIP archive

Comments: 0 | Viewed: 19 times | Downloaded: 0 times

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Workflow Hello abcd (1)

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Example of using the same inserted nested workflow twice, iterating over it twice, which should mean 4 distinct calls to the inner "concatenate" process. This workflow is mainly useful for provenance testing purposes.

Created: 2016-03-15

Credits: User Stian Soiland-Reyes

Workflow Extract DEC and RA from whitespace separat... (2)

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This workflow extracts DEC and RA coordinates from a whitespace seperated file and this is a silly description.

Created: 2012-05-10 | Last updated: 2012-09-24

Credits: User Stian Soiland-Reyes

Workflow Find workflow ancestors (2)

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Given a t2flow file (Taverna 2 workflow), extract ancestor workflow UUIDs and search myExperiment for matching workflow entries. Note that this will also match the workflow itself and nested workflows, but does not match against other workflows having the same ancestors (but newer UUIDs).

Created: 2012-05-08 | Last updated: 2012-07-09

Credits: User Stian Soiland-Reyes

Workflow Check Java Cryptography Unlimited Strength (1)

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Checks if Java Cryptography Extension (JCE) Unlimited Strength Jurisdiction Policy Files is installed, and redirects user to correct download page and relevant lib/security folder if not.

Created: 2012-05-08 | Last updated: 2012-05-08

Credits: User Stian Soiland-Reyes

Attributions: Workflow Find/show Taverna's home directory

Workflow Hello Anyone (1)

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An extension to helloworld.t2flow - this workflow takes a workflow input "name" which is combined with the string constant "Hello, " using the local worker "Concatenate two strings", and outputs the produced string to the workflow output "greeting".

Created: 2012-01-03 | Last updated: 2014-03-03

Credits: User Stian Soiland-Reyes

Attributions: Workflow Hello World

Workflow Hello World (1)

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One of the simplest workflows possible. No workflow input ports, a single workflow output port "greeting", outputting "Hello, world!" as produced by the String Constant "hello".

Created: 2012-01-03 | Last updated: 2014-03-03

Credits: User Stian Soiland-Reyes

Workflow XML-RPC example current time (1)

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Using Apache ws-xmlrpc from Beanshell scripts to call time.xmlrpc.com - see http://www.xmlrpc.com/currentTime To use, download the JARs from http://ws.apache.org/xmlrpc/download.html (ie. http://apache.mirror.anlx.net//ws/xmlrpc/apache-xmlrpc-current-bin.zip ) - unzip and put into Taverna's home directory lib/ folder. Right-click on the Beanshell script and check the "Dependencies" tab to check that all JARs have been ticked off (minimum required: ws-common-util.jar, xmlrpc-client.jar and x...

Created: 2011-08-11 | Last updated: 2011-08-11

Credits: User Stian Soiland-Reyes

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