All content

Search filter terms
Filter by category
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by wsdl
Filter by curation
Results per page:
Sort by:
Showing 158 results. Use the filters on the left and the search box below to refine the results.
User: Antoon Goderis

Workflow blast_simplifier.xml (1)

Thumb
No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Creator

Pack Paul Fisher workflows for benchmarks PR and CA2


Created: 2008-07-12 20:26:49 | Last updated: 2008-07-13 09:21:55

Please note that the workflows in this pack are not being maintained. For updated workflows check out http://www.myexperiment.org/users/43

77 items in this pack

Comments: 0 | Viewed: 314 times | Downloaded: 57 times

Tags:

Workflow 1 (2)

Thumb
Trivial workflow which will initially fail, retry twice then fall over to the alternative specified for the FailingThing process.

Created: 2007-11-06 | Last updated: 2007-11-20

Credits: User Antoon Goderis User Carole Goble User A. Random Scientist Network-member try it out

Attributions:

Workflow Picture of me (2)

Thumb
If you enter http://www.cs.man.ac.uk/~goderisa as input I smile back at you as output.

Created: 2007-10-03

Uploader

Blob Workflow re-use and discovery in bioinformatics

Created: 2008-10-03 16:34:45

Credits: User Antoon Goderis

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

Antoon Goderis, PhD thesis, University of Manchester, 2008.

File type: Adobe PDF

Comments: 0 | Viewed: 110 times | Downloaded: 811 times

This File has no tags!

Workflow metabolic_pathway.xml (1)

Thumb
A list of Kegg entires are supplied to the Kegg database which then retrieves the associated metabolic pathways for each entry supplied. e.g. Ids takes in a value of 351, whilst abbr takes in a value of hsa. Thus hsa:351 corresponds to neurodegenerative disorders and alzheimers disease pathways. [fisherp@cs.man.ac.uk]

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Creator

Pack Peter Li workflows for benchmarks PR and CA2


Created: 2008-07-13 20:32:39 | Last updated: 2008-07-13 20:47:19

Please note that the workflows in this pack are not being maintained. For updated workflows check out http://www.myexperiment.org/users/221

66 items in this pack

Comments: 0 | Viewed: 149 times | Downloaded: 22 times

Tags:

Creator

Pack Workflow discovery benchmarks


Created: 2008-07-12 11:20:23 | Last updated: 2008-10-09 16:41:46

This pack contains benchmarks that measure how bioinformaticians discover Taverna workflows. Several subpacks are available: Collection of workflows by Paul Fisher, used in benchmarks PR2 and CA2 Collection of workflows by Peter Li, used in benchmarks PR2 and CA2  

7 items in this pack

Comments: 0 | Viewed: 143 times | Downloaded: 47 times

Tags:

Workflow BLASTP with simplified results returned (2)

Thumb
Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

Created: 2007-10-03

Uploader

Blob User survey report

Created: 2008-10-10 09:44:52

Credits: User Antoon Goderis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Summary report of user survey on workflow sharing, re-use, and discovery

File type: Adobe PDF

Comments: 0 | Viewed: 41 times | Downloaded: 43 times

This File has no tags!

Results per page:
Sort by: