File Entry: Prediction of Protein Residue Contact Using Support Vector Machine

Created: 2012-05-11 02:44:49
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Version created on: 2012-05-11 02:44:49


Information Description

 Prediction of protein residue contact is one of the

important two-dimensional prediction tasks in protein structure
prediction. The residue contact map of protein contains information
which represents three-dimensional conformation of protein.
However the accuracy of the prediction is dependent on the type of
protein information used to distinguish between contacts or noncontacts.
According to CASP (Critical Assessment of Techniques of
Protein Structure Prediction) the accuracy of protein contact map
prediction is still low due to the behaviour of the predictors
developed where the predictors only effective against specific type
of protein stucture. In order to further improve the performance of
the predictor, effective features must be identified and used.
Therefore, this research is conducted to determine the effectiveness
of the existing features used in protein contact map prediction.

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