File Entry: Prediction of Protein Residue Contact Using Support Vector Machine

Created: 2012-07-24 04:19:46
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Version created on: 2012-07-24 04:19:46

Information Description

 Prediction of protein residue contact is one of the important twodimensional

prediction tasks in protein structure prediction. The residue contact
map of protein contains information which represents three-dimensional
conformation of protein. However the accuracy of the prediction is dependent
on the type of protein information used to distinguish between contacts or noncontacts.
According to CASP (Critical Assessment of Techniques of Protein
Structure Prediction) the accuracy of protein contact map prediction is still low
due to the behaviour of the predictors developed where the predictors only
effective against specific type of protein structure. In order to further improve
the performance of the predictor, effective features must be identified and used.
Therefore, this research is conducted to determine the effectiveness of the
existing features used in protein contact map prediction.

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