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Group: BioVeL internal
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Project Biovel

Blob Integral Projection Model documentation

Created: 2013-08-13 13:22:56 | Last updated: 2014-07-04 12:20:25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Integral Projection Model for Demographic Modelling v34 Blob Demographic data Cryptantha flava

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Integral Projection Model Workflow provides an environment for create an integral projection model and to calculate its population growth, structure, sensitivities and elasticities analyses, age-specific metrics, etc.Create an IPM with no density dependence and perform several analyses on it.Analyses:Lambda (λ).Sensitivity analysis.Elasticity analysis.Parameters ...

File type: Adobe PDF

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Project Biovel

Blob Demographic data Cryptantha flava

Created: 2013-08-13 10:13:10 | Last updated: 2014-07-04 12:30:08

Credits: User Robcito

Attributions: Workflow Integral Projection Model for Demographic Modelling v34

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .csv file of one year demographic data of the species: Cryptantha flava, collected and published by Roberto Salguero-Gómez (University of Queensland).This file allow users to run Integral Projection Model workflow. http://www.myexperiment.org/workflows/3687.html Each row represents one observation of an organism in the population at one census time t with the following column names:size: size of individuals in census time tsizeNext: size of individual...

File type: Excel workbook

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Project Biovel

Blob TRE file

Created: 2014-09-30 09:34:51

Credits: User Antonio Velez-Espino User Andres Araujo

Attributions: Workflow Exploration of fishing scenarios

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains the time series of terminal run equivalents (TREs) of all ER indicator stocks.

File type: text/csv

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Project Biovel

Blob TRE HR file

Created: 2014-09-30 09:32:41

Credits: User Antonio Velez-Espino User Andres Araujo

Attributions: Workflow Exploration of fishing scenarios

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains the time series of terminal run equivalent (TRE) ocean harvest rates of ER indicator stocks.

File type: text/csv

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Project Biovel

Blob Term run file

Created: 2014-09-30 09:29:57 | Last updated: 2014-09-30 09:30:11

Credits: User Antonio Velez-Espino User Andres Araujo

Attributions: Workflow Exploration of fishing scenarios

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains the time series of terminal run for each of the ER indicator stocks.

File type: text/csv

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Project Biovel

Blob ER_Indicators file

Created: 2014-09-30 09:27:47

Credits: User Antonio Velez-Espino User Andres Araujo

Attributions: Workflow Exploration of fishing scenarios

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file shows the exploitation rate (ER) indicator stocks used to represent exploitation-rate time series with terminal-run time series of Chinook salmon aggregates.

File type: text/csv

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Project Biovel

Blob Killer whale demography documentation

Created: 2014-09-26 12:19:25

Credits: User Maria Paula Balcazar-Vargas User Antonio Velez-Espino User Andres Araujo User Jon Giddy User Francisco Quevedo

Attributions: Workflow Killer whale demography

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation contains the tutorial to run the Killer whale demography workflows. This tutorial explains the type of input data needed to run the workflow. The corresponding analysis use data from two distinct O. orca populations in Canada, Southern Resident Killer Whales (SRKW) and the Northern Resident Killer Whales (NRKW). The Killer whale demography workflow performs the following analyses: •      Vital rates estimation and probability dis...

File type: Adobe PDF

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Project Biovel

Blob Resident killer whale-chinook salmon interactions an...

Created: 2014-09-26 12:09:28 | Last updated: 2014-09-26 12:11:12

Credits: User Maria Paula Balcazar-Vargas User Antonio Velez-Espino User Andres Araujo User Jon Giddy User Francisco Quevedo

Attributions: Workflow Exploration of fishing scenarios Workflow Resident killer whale-chinook salmon interactions

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation contains the tutorial to run two related workflows. 1.    Resident killer whale-chinook salmon interactions workflow The Resident killer whale-chinook salmon interactions workflow provides an environment to create calculate a two-sex stage-structured matrix with no density dependence and with vital rates as random variables or as functions of Chinook abundance from specific stock aggregates and to (i) quantify the differences in demographic rates be...

File type: Adobe PDF

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Project Biovel

Blob Sensitivity of resident killer whale population dyna...

Created: 2014-09-11 09:11:46 | Last updated: 2014-09-11 09:12:49

Credits: User Antonio Velez-Espino User Andres Araujo

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

Sensitivity of resident killer whale population dynamics to Chinook salmon abundance.L. Antonio Vélez-Espino1,£, John K.B. Ford2, Charles K. Parken1, Graeme Ellis2, Eric Ward3, Larrie LaVoy4, Ken Balcomb5, M. Bradley Hanson3, Dawn P. Noren3, Tom Cooney4, Rishi Sharma6,7.(1) Salmon and Freshwater Ecosystems Division, Fisheries and Oceans Canada; (2) Marine Mammal Division, Fisheries and Oceans Canada; (3) Conservation Biology Division, Northwest Fisheries Science Center (NOAA); (4...

File type: Adobe PDF

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Project Biovel

Blob Comparative Demography and Viability of Northeastern...

Created: 2014-09-11 09:03:19

Credits: User Antonio Velez-Espino User Andres Araujo

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

Comparative Demography and Viability of Northeastern Pacific Resident Killer Whale Populations at Risk.L.A. Vélez-Espino, J.K.B. Ford, H.A. Araujo, G. Ellis, C.K. Parken, and K.C. BalcombFisheries and Oceans CanadaScience Branch, Pacific RegionPacific Biological StationNanaimo, BCV9T 6N72014Canadian Technical Report ofFisheries and Aquatic Sciences 3084 Two distinct populations of resident killer whales (Orcinus orca) in the northeastern Pacific Ocean have been identified in Canad...

File type: Adobe PDF

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