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Type: Trident (Package) Licence: by-sa
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Blob agave.dtd

Created: 2011-10-06 03:48:27 | Last updated: 2011-10-06 04:05:28

Credits: User Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file is required for converting the GenBank gbk file into an XML. This file needs to be save to Taverna folder: (Default location on Mac): /Applications/Taverna 2.3.0.app/Contents/Resources/Java

File type: Trident (Package)

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Blob Plots fibrosis data (R script)

Created: 2011-05-23 13:02:34 | Last updated: 2011-05-24 20:27:58

Credits: User Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Plots a (modified) heatmap of the fibrosis gene data describing different genes used in various studies on fibrosis. The input dataset is prepared in the "prepare-fibrosis-data" RM workflow. Possible values in the input data are: 1 (a gene is Up regulated), -1 (Down regulated), 0 (Unmodified) and -2 (missing value). It requires the "gplots" R package.

File type: Trident (Package)

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Blob Plots an attribute similarity matrix on gene data (R...

Created: 2011-05-23 13:01:44 | Last updated: 2011-05-25 15:46:10

Credits: User Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Plots an attribute similarity matrix computed from the provided data frame. The input dataset is prepared in the "prepare-gene-correlation" RM workflow and is assumed to contain genes as rows, and gene functions and locations as columns. In the visualized matrix columns correspond to gene locations and rows correspond to gene functions. The supported types of attribute similarities are: the covariance, the Hamming distance, and a modified Hamming distance that focuses on columns wit...

File type: Trident (Package)

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Blob R library

Created: 2011-05-23 12:50:59 | Last updated: 2011-05-24 20:27:32

Credits: User Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

R library used by other R scripts.

File type: Trident (Package)

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Blob KUP titles cytoscape triple graph

Created: 2011-05-20 22:49:34 | Last updated: 2011-05-20 22:50:45

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is a cytoscape .cys file that contains the graph discussed in the paper. "An exercise in kidney factomics: From article titles to RDF knowledge base".

File type: Trident (Package)

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Blob Training data for article title classification

Created: 2011-04-21 15:23:53 | Last updated: 2011-04-21 15:24:46

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is the training data used for article title classification

File type: Trident (Package)

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Blob Wound Image Data Mining

Created: 2011-04-17 14:00:45 | Last updated: 2011-05-04 12:35:28

Credits: User Dr. Sven Van Poucke

Attributions: Workflow Wound Image Data Mining Blob Wound Image Data Mining

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The aim of research behind this file is to discover the way our previously published color-calibration algorithm influences de detection and description of salient points. A recent paper can be found at: http://www.biomedcentral.com/1471-2342/10/7. Other work: Automatic Colorimetric Calibration of Chronic Wound Imaging. S. Van Poucke, Y. Vander Haeghen, K. Vissers, T. Meert, P. G. Jorens BMC Med Imaging. 2010 Mar 18;10:7 Comparative analysis of two methods for wound bed area measur...

File type: Trident (Package)

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Blob Simulation results

Created: 2011-03-23 09:52:21 | Last updated: 2011-03-23 09:52:24

Credits: User John Brookes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Results from the circle drawing functions RTL simulation.

File type: Trident (Package)

Comments: 1 | Viewed: 19 times | Downloaded: 12 times

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Blob Trichuriasis Induced Colitis

Created: 2011-02-16 15:16:17 | Last updated: 2011-02-16 15:16:24

Credits: User Paul Fisher

Attributions: Workflow Pathways and Gene annotations for RefSeq ids Workflow KEGG pathways common to both QTL and microarray based investigations Workflow Pathways and Gene annotations for QTL region Workflow Pathway and Gene to Pubmed

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the results of workflow runs for: identifying genes in each of the 7 QTL regions for Trichuris muris infection; identifying genes differentially expressed in mice challenged with Trichuris muris; and Text mining results (including cosine vector scores and Term Enrichment values).

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Blob bowtie.properties

Created: 2010-09-16 11:31:11

Credits: User Wbkoets

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Properties file for Bowtie. Use this to change command line options.

File type: Trident (Package)

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