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User: Eleni
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Blob Supplementary file 5: Percentile scores

Created: 2016-10-25 15:05:47

Credits: User Eleni

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document presents the percentile score of the prioritized gene list when compared to the frequency distribution of 100 match scores of randomly sampled gene-HTT concept pairs out of the 12,391 genes in our concept profile database.

File type: Plain text

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Blob Supplementary file 4: Decision about the promoter re...

Created: 2016-10-25 15:05:15

Credits: User Eleni

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document is included as a reference to describe the decisions that were made concerning the promoter size using an older version of epigenetic data from ENCODE. In this file we present the additional runs of the workflow compute\_overlaps that were performed with different parameters in order to test and decide for the best promoter region and overlap parameters. 

File type: Word document

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Blob Supplementary file 3: Gene prioritization

Created: 2016-10-25 15:04:40

Credits: User Eleni

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Top 100 novel proteins, resulted from the semantic analysis associated with HTT and epigenetics

File type: Excel workbook

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Blob Supplementary file 2: Annotations of CpG containing ...

Created: 2016-10-25 15:03:45

Credits: User Eleni

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The top 50 annotations characterising each group of genes with CpG islands and without, resulted from the semantic analysis of those two groups of genes with Biological Processes. 

File type: Plain text

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Blob Supplementary file 1: Unique annotations of genes in...

Created: 2016-10-25 15:01:52

Credits: User Eleni

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains the results from the semantic analysis with Biological Processes of the genes that were overlapping with active TSS, bivalent TSS, heterochromatin and repressed polycomb chromatin state. The annotations that we present here are uniquely characterizing each gene list (as resulted from the CPA out of the top 50 annotations). 

File type: Plain text

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Blob converter_nanopublications

Created: 2015-04-03 21:08:40

Credits: User Eleni Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

this script is part of the nanopublication workflow from pack http://www.myexperiment.org/packs/486.html

File type: application/x-ruby

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Blob create nanopublications

Created: 2015-04-03 21:05:56

Credits: User Eleni Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This ruby script creates nanopublications for the results of the prioritized gene list from pack : http://www.myexperiment.org/packs/486.html 

File type: application/x-ruby

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Blob workflow sketch Hd chromatin analysis

Created: 2013-08-30 12:01:45 | Last updated: 2013-11-04 19:18:11

Credits: User Eleni

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Sketch that demonstrates how the workflows of our chromatin analysis in HD are connected with each other, plus a short explanation for each one. 

File type: PNG image

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