Group: A Team

| Members (4) | News | Shared Items (16) | Creditations (5) | Tags (0) | Announcements | Comments (0) |

 Team A from CSC8308, Newcastle University, 2011

Created at: Thursday 17 March 2011 @ 12:16:21 (GMT)

Unique name: CSC8308_ATeam


Administrators

Members

Information Owner

4 members

16 shared items

0 announcements

This group has been credited 5 times

Information Tags (0)

None

Log in to add Tags

Subscribe to A Team Group Announcements feed Announcements

(public only)

None

[ See All ]

 

News

No news

Shared Items (16)

Note: some items may not be visible to you, due to viewing permissions.

Sort:

Workflow

Taverna 2

Original Uploader

Workflow Extract unique proteins from blast results (v4)

Created: 24/03/11 @ 19:49:43 | Last updated: 01/04/11 @ 12:26:27

Credits: User Morgan Taschuk Network-member A Team

Attributions: Workflow Parse unique proteins from Blast file

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

The workflow parses uses the tab-delimited BLAST results to determine the unique proteins found in the target genome that have no similarity to the source genome.The workflow parses uses the blast results to determine the unique proteins found in the target genome that have no similairty to the source genome. Using these unique protein ids, and the original target protein fasta file, a fasta file of unique proteins is created.This workflow allows you to configure a BioMart query to fetch sequ...

Rating: 0.0 / 5 (0 ratings) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 46 times | Downloaded: 22 times

Tags (8):
Show View Download Download (v4)

Workflow

Taverna 2

Original Uploader

Workflow Drug Re-Purposing Workflow (v6)

Created: 25/03/11 @ 20:06:13 | Last updated: 01/04/11 @ 12:40:56

Credits: User Morgan Taschuk Network-member A Team

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

The drug repurposing workflow system screens at least 20 bacterial proteomes against this set of proteins that are already being treated against using established drugs. By screening the bacterial proteomes it will be possible to find proteins of highly similar structure to those that are existing drug protein targets and so this will infer that it is highly likely that the drugs can be used as antimicrobials against these proteins of highly similar structure. Proteomes that will be screene...

Rating: 0.0 / 5 (0 ratings) | Versions: 6 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 62 times | Downloaded: 27 times

Tags (7):
Show View Download Download (v6)

Workflow

Taverna 2

Original Uploader

Workflow Threshold BLAST results (v2)

Created: 28/03/11 @ 11:57:51 | Last updated: 01/04/11 @ 12:28:38

Credits: User Morgan Taschuk Network-member A Team

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

Thresholds tab-delimited BLAST results to a certain percent identity.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 16 times | Downloaded: 15 times

Tags (5):
Show View Download Download (v2)

Workflow

Taverna 2

Original Uploader

Workflow KEGG Pathways and Additional Information from BLAST (v2)

Created: 29/03/11 @ 11:16:17 | Last updated: 30/03/11 @ 16:09:01

Credits: User Morgan Taschuk

Attributions: Workflow extract_uniprot_embl_gi.xml

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

Takes in a tab-delimited BLAST file and finds additional information about the target proteins from KEGG, Gene Ontology, Interpro and PubMed.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 45 times | Downloaded: 20 times

Tags (6):
Show View Download Download (v2)

Workflow

Taverna 2

Original Uploader

Workflow Print Analysis Information to HTML (v2)

Created: 29/03/11 @ 16:41:48 | Last updated: 01/04/11 @ 12:29:35

Credits: User Morgan Taschuk

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

Takes in a lot of parameters in order to construct an HTML header to display the information.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 20 times | Downloaded: 11 times

Tags (1):
Show View Download Download (v2)

Workflow

Taverna 2

Original Uploader

Workflow Compile Protein FASTA from Target to Drug file (v1)

Created: 30/03/11 @ 10:34:37 | Last updated: 30/03/11 @ 10:34:40

Credits: User Morgan Taschuk User Andrewsmeaton

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

Uses a tab-delimited file with protein target and drug information (created in Ondex) to compile a protein FASTA file including each target.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 11 times | Downloaded: 9 times

Tags (3):
Show View Download Download (v1)

File

Uploader:

Blob Drug Target FASTA

Created: 30/03/11 @ 10:51:26 | Last updated: 01/04/11 @ 13:10:05

Credits: User Morgan Taschuk User Andrewsmeaton

Attributions: Workflow Compile Protein FASTA from Target to Drug file

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 The FASTA file containing the protein sequences of the drug targets from Ondex.

File type: Plain text

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 8 times | Downloaded: 4 times

This File has no tags!

 Show View Download Download

Workflow

Taverna 2

Original Uploader

Workflow Vaccine Targets Workflow (v3)

Created: 30/03/11 @ 20:45:57 | Last updated: 01/04/11 @ 12:45:26

Credits: User Morgan Taschuk Network-member A Team

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

Comparison of the genome of Bacillus anthracis to closely related strains will allow the discovery of proteins which may be involved in pathogenicity. Based on the biochemical pathways where the protein interacts, vaccines can be designed for these unique proteins. By gaining insight into the biochemical pathways that the unique proteins are involved in, the proteins can also be assessed for potential quality as vaccines. The key components of the vaccine finding system are the following: T...

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 41 times | Downloaded: 13 times

This Workflow has no tags!

 Show View Download Download (v3)

Workflow

Taverna 2

Original Uploader

Workflow Print Protein Information to HTML (v1)

Created: 01/04/11 @ 12:44:20

Credits: User Morgan Taschuk

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

Takes in a lot of parameters in order to construct an HTML table to display the information.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 11 times | Downloaded: 9 times

This Workflow has no tags!

 Show View Download Download (v1)

Workflow

Taverna 2

Original Uploader

Workflow UniProt to Gene Ontology (v1)

Created: 01/04/11 @ 12:45:56 | Last updated: 01/04/11 @ 12:46:26

Credits: User Morgan Taschuk

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

Used parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html) to retrieve results about the protein from Gene Ontology and outputs it in text format.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 24 times | Downloaded: 10 times

This Workflow has no tags!

 Show View Download Download (v1)

Workflow

Taverna 2

Original Uploader

Workflow Use UniProt to retrieve InterPro data (v1)

Created: 01/04/11 @ 12:50:25

Credits: User Morgan Taschuk

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

Used parsed Uniprot results (see workflowUsed parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html) to retrieve results about the protein from InterPro.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 15 times | Downloaded: 6 times

This Workflow has no tags!

 Show View Download Download (v1)

Workflow

Taverna 2

Original Uploader

Workflow Parsed UniProt to PubMed (v1)

Created: 01/04/11 @ 12:51:20 | Last updated: 01/04/11 @ 12:52:02

Credits: User Morgan Taschuk

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

Uses the parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html) to retrieve information from PubMed.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 31 times | Downloaded: 8 times

This Workflow has no tags!

 Show View Download Download (v1)

Creditations (5)

Note: some items may not be visible to you, due to viewing permissions.

Workflow

Taverna 2

Original Uploader

Workflow Vaccine Targets Workflow (v3)

Created: 30/03/11 @ 20:45:57 | Last updated: 01/04/11 @ 12:45:26

Credits: User Morgan Taschuk Network-member A Team

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

Comparison of the genome of Bacillus anthracis to closely related strains will allow the discovery of proteins which may be involved in pathogenicity. Based on the biochemical pathways where the protein interacts, vaccines can be designed for these unique proteins. By gaining insight into the biochemical pathways that the unique proteins are involved in, the proteins can also be assessed for potential quality as vaccines. The key components of the vaccine finding system are the following: T...

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 41 times | Downloaded: 13 times

This Workflow has no tags!

 Show View Download Download (v3)

Workflow

Taverna 2

Original Uploader

Workflow Threshold BLAST results (v2)

Created: 28/03/11 @ 11:57:51 | Last updated: 01/04/11 @ 12:28:38

Credits: User Morgan Taschuk Network-member A Team

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

Thresholds tab-delimited BLAST results to a certain percent identity.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 16 times | Downloaded: 15 times

Tags (5):
Show View Download Download (v2)

Workflow

Taverna 2

Original Uploader

Workflow Drug Re-Purposing Workflow (v6)

Created: 25/03/11 @ 20:06:13 | Last updated: 01/04/11 @ 12:40:56

Credits: User Morgan Taschuk Network-member A Team

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

The drug repurposing workflow system screens at least 20 bacterial proteomes against this set of proteins that are already being treated against using established drugs. By screening the bacterial proteomes it will be possible to find proteins of highly similar structure to those that are existing drug protein targets and so this will infer that it is highly likely that the drugs can be used as antimicrobials against these proteins of highly similar structure. Proteomes that will be screene...

Rating: 0.0 / 5 (0 ratings) | Versions: 6 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 62 times | Downloaded: 27 times

Tags (7):
Show View Download Download (v6)

Workflow

Taverna 2

Original Uploader

Workflow Extract unique proteins from blast results (v4)

Created: 24/03/11 @ 19:49:43 | Last updated: 01/04/11 @ 12:26:27

Credits: User Morgan Taschuk Network-member A Team

Attributions: Workflow Parse unique proteins from Blast file

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb

The workflow parses uses the tab-delimited BLAST results to determine the unique proteins found in the target genome that have no similarity to the source genome.The workflow parses uses the blast results to determine the unique proteins found in the target genome that have no similairty to the source genome. Using these unique protein ids, and the original target protein fasta file, a fasta file of unique proteins is created.This workflow allows you to configure a BioMart query to fetch sequ...

Rating: 0.0 / 5 (0 ratings) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 46 times | Downloaded: 22 times

Tags (8):
Show View Download Download (v4)


Comments Comments (0)

No comments yet

Log in to make a comment


What is this?

Linked Data

Non-Information Resource URI: http://www.myexperiment.org/groups/310


Alternative Formats

HTML
RDF
XML

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Popular Tags
25 tags
[All Tags]

Copyright © 2007 - 2011 The University of Manchester and University of Southampton

Front Page

Home

Invite people to myExperiment

Help pages

About Us

News and Events

Mailing List

Contact Us

Developers

Publications

Taverna Workflow Workbench

myGrid

BioCatalogue

Trident

Google Coop Search

EPSRC

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3