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Project Biovel

Workflow configure_external_test (5)

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Displays an interface allowing configuration of external test. Currently can be used to skip external test or run a cross validation procedure. In the later case, it is possible to specify the number of replicates, if AUC should be calculated, if confusion matrix should be calculated (using either a fixed threshold or lpt - lowest precision threshold).

Created: 2013-12-24 | Last updated: 2015-04-04

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Project Biovel

Workflow parse_csv_points (4)

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Parses csv content with species occurrence points in the DarwinCore archive format, determining column indexes and returning the records as a list of points in openModeller format (XML). No distinction is made between presences or absences.

Created: 2013-12-24 | Last updated: 2014-11-18

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Project Biovel

Workflow biostif_upload_points (5)

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Uploads species occurrence points to BioSTIF server.

Created: 2013-12-24 | Last updated: 2014-10-24

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Project Biovel

Workflow project_model (9)

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Projects a model based on the specified parameters.

Created: 2013-12-24 | Last updated: 2014-12-04

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Project Biovel

Workflow select_or_create_mask (7)

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Displays an interface so that users can select or create a mask.

Created: 2013-12-10 | Last updated: 2015-04-04

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Project Biovel

Workflow select_algorithm_and_set_parameters (2)

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Displays an interface to select one of the algorithms and then another interface to set algorithm parameter values. Returns selected algorithm and parameter values as XML.

Created: 2013-12-06 | Last updated: 2015-04-04

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Project Biovel

Workflow get_available_algorithms (3)

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Retrieves all available algorithms from the openModeller web service, returning an XML.

Created: 2013-12-06 | Last updated: 2014-11-04

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Project Biovel

Workflow get_available_layers (8)

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Retrieves all available environmental layers from the openModeller web service and optionally from the BioSTIF service. In the first case, a single XML is returned according to the openModeller XML Schema, and in the second case a list of XML is returned for each BioSTIF workspace.

Created: 2013-12-06 | Last updated: 2015-03-26

Pack ENM components


Created: 2013-12-06 17:57:57 | Last updated: 2014-11-17 19:06:40

ENM Components is a set of Taverna components (sub-workflows) specialized in ecological niche modelling (ENM) tasks. They simplify the creation of new workflows by encapsulating details that may not be trivial to implement and they can be reused across different workflows. To use ENM components on new workflows with the Taverna workbench, just click on “import new service” on the “service panel”, choose “component service”, select “myExperiment”...

25 items in this pack

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Project Biovel

Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Created: 2013-08-13 12:17:28

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow Matrix Population Model analysis v10 (http://www.myexperiment.org/workflows/3686.html) If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 1996. Temporal and Spatial Varia...

File type: Plain text

Comments: 0 | Viewed: 40 times | Downloaded: 29 times

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