Packs

Search filter terms
Filter by tag
Filter by user
Filter by licence
Filter by group
Results per page:
Sort by:
Showing 113 results. Use the filters on the left and the search box below to refine the results.
Licence: by-sa
Creator
Project Biovel

Pack Calculate quasi-extinction threshold pack


Created: 2014-07-30 14:00:20 | Last updated: 2014-08-14 12:05:20

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow estimates by simulation the quasi-extinction probability time cumulative distribution function for a structured population in an independently and identically distributed (iid) stochastic environment. This workflow is based on the popbio package (stoch.quasi.ext - Calculate quasi-extinction threshold, Stubben, Milligan and Nantel, 2013) based on the The MATLAB code in Box 7.5 (Morris and Doak ...

8 items in this pack

Comments: 0 | Viewed: 46 times | Downloaded: 21 times

Tags:

Creator
Project Biovel

Pack Cohen cumulative distance pack


Created: 2014-07-23 13:43:22 | Last updated: 2014-07-24 08:21:00

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Cohen’s cumulative distance Workflow provides an environment to calculate the Cohen’s cumulative distance. The Cohen’s cumulative distance measures the difference between observed and expected vectors along the matrix path that the population would take to reach the expected population vector. It is a function of both the observed stage distribution (n0) and the structure of the matrix...

3 items in this pack

Comments: 0 | Viewed: 41 times | Downloaded: 22 times

Tags:

Creator
Project Biovel

Pack Keyfitz's delta pack


Created: 2014-07-23 11:19:37 | Last updated: 2014-07-24 08:25:22

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Keyfit delta Workflow provides an environment to calculate the Keyfit delta value. Keyfitz’s delta is a measure of the distance between any two probability vectors (Keyfitz 1968). In this case is a measure of the distance between n (Observed Stage Distribution) and w (Stable Stage Distribution). The maximum value is 1 and the minimum value is 0 (when the vectors are identical).

3 items in this pack

Comments: 0 | Viewed: 43 times | Downloaded: 26 times

Tags:

Creator
Project Biovel

Pack Simulate stochastic growth from a sequence of matric...


Created: 2014-07-10 12:05:44 | Last updated: 2014-07-30 13:48:06

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Simulate stochastic growth from a sequence of matrices Workflow provides an environment to simulate stochastic growth by projection using whole matrix selection techniques in an independently and identically distributed (iid) environment from a set of 2 or more projection matrices.Outputs:Equal selection dataStochastic projectionUnequal selection dataTo know more details about the analysis, Morris and D...

8 items in this pack

Comments: 0 | Viewed: 51 times | Downloaded: 31 times

Tags:

Creator

Pack ARC to WARC migration with quality assurance scripts


Created: 2014-07-10 08:39:49

These are the tool service scripts used in Taverna workflow available on myExperiment (http://www.myexperiment.org/workflows/4333). The Taverna workflow is configured by adapting the values of the constant values (light-blue boxes) which define the paths to configuration files, deployment files, and scripts in the processing environment. However, as Taverna is just used as an orchestration tool to build a sequence of bash script invocations, it is also possible to just use the individual scri...

0 items in this pack

Comments: 0 | Viewed: 18 times | Downloaded: 10 times

This Pack has no tags!

Creator
Project Biovel

Pack Parametric Bootstrap or Resample a projection matrix...


Created: 2014-07-09 14:03:43 | Last updated: 2014-07-25 09:41:32

This pack contains a workflow, a file and documentation (tutorial to run the workflow). The Parametric Bootstrap or Resample a projection matrix Workflow provides an environment to resample a projection matrix using a multinomial distribution for transitions and a log normal distribution for fertilities (Stubben, Milligan, and Nantel. 2011). The resample is based on number of plants surveyed. The projection matrix A is first split into separate transition and fertility matrices. Dead fates ar...

3 items in this pack

Comments: 0 | Viewed: 49 times | Downloaded: 29 times

Tags:

Creator
Project Biovel

Pack Bootstrap of observed census transitions pack


Created: 2014-07-09 12:56:51 | Last updated: 2014-07-25 10:37:19

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Bootstrap of observed census transitions (confidence intervals of λ) workflow for local execution calculates bootstrap distributions of population growth rates (λ), stage vectors, and projection matrix elements by randomly sampling with replacement from a stage-fate data frame of observed transitions. The goal of a demographic analysis is very often to estimate lambda, because lambda is es...

4 items in this pack

Comments: 0 | Viewed: 40 times | Downloaded: 26 times

Tags:

Creator

Pack Taverna - VPH-Share workshop 17-18 July 2014


Created: 2014-07-09 11:36:13 | Last updated: 2014-08-13 14:37:51

Taverna - VPH-Share workshop 17-18 July 2014Location: The Pam Liversidge Building, Sir Frederick Mappin Building – Sheffield S1 3JD, UKRegistration link: http://bit.ly/vph-share-trainingFormat: The workshop is a two-day hands-on training event about workflows in the biomedical arena, with a focus on VPH-Share and Taverna.Target community & qualifications: The target community is developers and research scientists working in all areas of biomedical/healthcare research within the...

12 items in this pack

Comments: 1 | Viewed: 82 times | Downloaded: 13 times

This Pack has no tags!

Creator
Project Biovel

Pack Net reproductive rate (Ro) pack


Created: 2014-07-04 13:59:07 | Last updated: 2014-07-25 11:25:32

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The . Net reproductive rate (Ro) Workflow provides an environment to calculate the net reproductive rate (Ro). Ro is the mean number of offspring by which a new-born individual will be replaced by the end of its life, and thus the rate by which the population increases from one generation to the next.

3 items in this pack

Comments: 0 | Viewed: 40 times | Downloaded: 18 times

Tags:

Creator
Project Biovel

Pack Generation time (T) pack


Created: 2014-07-04 13:20:43 | Last updated: 2014-07-25 11:22:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Generation Time (T) Workflow provides an environment to calculate the generation time. Th generation time is the time T required for the population to increase by a factor of Ro (net reproductive rate). In other words, T calculates how much time takes to a plant/animal to replace itself by a factor of Ro.

3 items in this pack

Comments: 0 | Viewed: 41 times | Downloaded: 15 times

Tags:

Results per page:
Sort by: