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User: Saverio Vicario
Creator
Project Biovel

Pack Phylogenetic Diversity


Created: 2014-05-19 12:29:08 | Last updated: 2014-05-19 13:13:10

Tools to study diversity across sample and environment taking account the phylogenetic structure of the observation

3 items in this pack

Comments: 0 | Viewed: 24 times | Downloaded: 8 times

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Creator
Project Biovel

Pack BayesianPhylogeneticInference


Created: 2013-12-11 13:40:50 | Last updated: 2014-05-19 13:01:14

The family propose different steps to perform a bayesian phylogenetic inference

8 items in this pack

Comments: 0 | Viewed: 31 times | Downloaded: 5 times

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Creator

Pack JSTInteraction


Created: 2013-12-11 13:12:49 | Last updated: 2014-06-17 15:20:46

Allow to interact with JST web service and JST Webdav server to access service of biodiversity catalogue https://www.biodiversitycatalogue.org/services/31

5 items in this pack

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Creator
Project Biovel

Pack Analysis of environmental sequences


Created: 2013-05-07 09:07:57 | Last updated: 2013-05-07 12:14:57

The pack should allow to analysis the differentiation across groups of samples of biological sequence

2 items in this pack

Comments: 0 | Viewed: 24 times | Downloaded: 10 times

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Creator
Project Biovel

Pack Perform Short Bayesian Phylogenetic Inference


Created: 2013-02-20 15:07:21 | Last updated: 2013-08-21 16:09:33

The Pack contain 3 workflows that perform and validate bayesian phylogenetic inference that differ from the kind of input. The pack is called short because the worlflow require that the user need to keep taverna engine always on for the the time of the analysis. This could be quite problematic for large analysis. In this case search help in the "Perform Long Bayesian Phylogenetic Inference" packIn this pack there are 3 workflows:1) User locally formatted input file (for details in n...

3 items in this pack

Comments: 0 | Viewed: 75 times | Downloaded: 13 times

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Creator
Project Biovel

Pack Perform Long Bayesian Phylogenetic Inference


Created: 2013-02-20 14:59:31 | Last updated: 2015-06-12 13:48:46

Phylogenetic inference with mrbayes requires long calculation. So is not possible to keep the taverna engine on for the time required for the analysis. The solution is to break the Workflow in 2 part: before and after submission to mrbayes service.In this pack there are 3 workflows for submission:1) User locally formatted input file (for details in nexus format for mrbayes http://mrbayes.sourceforge.net/wiki/index.php/Manual_3.2)2) User is helped by a GUI (graphical user interface) to define ...

4 items in this pack

Comments: 0 | Viewed: 105 times | Downloaded: 8 times

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