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SOAP
Submitter: |
Retrieved at: 19/10/10 @ 15:33:41 Last updated at: 17/02/12 @ 15:57:47 Categories (2): Provider: European Bioinformatics Institute (EBI)
PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously wit...
WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/prank?wsdl Service Enpoint: http://www.ebi.ac.uk/Tools/services/soap/prank |
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SOAP
Submitter: |
Retrieved at: 10/03/10 @ 11:27:25 Last updated at: 17/02/12 @ 15:56:04 This Service has no categories! Provider: Instituto Nacional de Bioinformatica (INB)
Authority: genome.imim.es - Runs Phrap to Assemble a set of DNA sequences, taking into account base quality data
WSDL Location: http://www.inab.org/cgi-bin/getMOBYWSDL/INB-dev/genome.imim.es/runPhrapWithQualityData Service Enpoint: http://genome.imim.es/cgi-bin/moby/devel/MobyServices.cgi |
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SOAP
Soaplab
Submitter: |
Retrieved at: 02/04/11 @ 00:18:07 Last updated at: 17/02/12 @ 15:58:15 This Service has no categories! Provider: European Bioinformatics Institute (EBI)
No description
WSDL Location: http://www.ebi.ac.uk/soaplab/services/nucleic_transcription.jaspscan?wsdl Service Enpoint: http://www.ebi.ac.uk/soaplab/services/nucleic_transcription.jaspscan |
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SOAP
Submitter: |
Retrieved at: 06/05/09 @ 11:55:39 Last updated at: 17/02/12 @ 15:54:12 This Service has no categories! Provider: Center for Biological Sequence Analysis (CBS)
This Web Service predicts location of ribosomal RNA genes in full genome sequences
by using Hidden Markov Models based on alignments from a highly cureated dataset of
structurally aligned sequnces.
The input is one or more genomic sequence(s) as either one or more contigs. Each contig
is submitted as one continous string of DNA together with the sequences identifier.
The kingdom (either Bacteria, Archaea, or Eukaryotes) is specified once for each job
that is submitted, using the a...
WSDL Location: http://www.cbs.dtu.dk/ws/RNAmmer/RNAmmer_1_2_ws0.wsdl Service Enpoint: http://ws.cbs.dtu.dk:80/cgi-bin/soap/ws/quasi.cgi |
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SOAP
Submitter: |
Retrieved at: 20/05/10 @ 14:51:27 Last updated at: 17/02/12 @ 15:57:34 Categories (1):
No description
WSDL Location: http://bioinformatics.istge.it:8080/axis/services/cabri.getFungiIdsByName?wsdl Service Enpoint: http://bioinformatics.istge.it:8080/axis/services/cabri.getFungiIdsByName |
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SOAP
Submitter: |
Retrieved at: 06/05/09 @ 11:01:42 Last updated at: 17/02/12 @ 15:53:40 Categories (1): Provider: Institut de Biologie et Chimie des Proteines (IBCP)
Clustalw @ IBCP (http://gbio-pbil.ibcp.fr)
WSDL Location: http://gbio-pbil.ibcp.fr/media/wsdl/ClustalwWS.wsdl Service Enpoint: http://gbio.ibcp.fr:8090/Clustalw_Service |
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SOAP
Submitter: |
Retrieved at: 10/03/10 @ 12:02:53 Last updated at: 17/02/12 @ 15:56:56 This Service has no categories! Provider: Instituto Nacional de Bioinformatica (INB)
Authority: bioinfo.cipf.es - This service detects blocks of functionally related genes (GO, KEGG, etc.) with significant coordinate (although modest) behaviour across a list of ranked genes using a segment test
WSDL Location: http://www.inab.org/cgi-bin/getMOBYWSDL/INB/bioinfo.cipf.es/runFatiScan Service Enpoint: http://biomoby.bioinfo.cipf.es/cgi-bin/MobyServices.cgi |
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SOAP
Submitter: |
Retrieved at: 10/03/10 @ 11:20:06 Last updated at: 17/02/12 @ 15:55:51 This Service has no categories! Provider: Instituto Nacional de Bioinformatica (INB)
Authority: inb.bsc.es - Converts a GenericSequence object into a NucleotideSequence.
WSDL Location: http://www.inab.org/cgi-bin/getMOBYWSDL/INB/inb.bsc.es/fromGenericToNucleotideSequence Service Enpoint: http://inb.bsc.es/cgi-bin/mobyServices/dispatchers/Dispatcher.cgi |
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SOAP
Submitter: |
Retrieved at: 26/06/09 @ 11:37:30 Last updated at: 17/02/12 @ 15:55:12 Categories (1): Provider: Center for Biological Sequence Analysis (CBS)
This Web Service accesses the database records and various tools of the
GenomeAtlas database v3. The records maintained by this database are synchronized regularly
with the Entrez Genome Project (http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi?view=1)
#
# DATABASE LOOK-UP FUNCTIONS
#
1. getSeq
Get one or more genomic sequences from the Genome Atlas database (update regularly against
Entrez Microbial Genomes), providing the genbank accession number.
Input:
*...
WSDL Location: http://www.cbs.dtu.dk/ws/GenomeAtlas/GenomeAtlas_3_0_ws1.wsdl Service Enpoint: http://ws.cbs.dtu.dk/cgi-bin/soap/ws/quasi.cgi |
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SOAP
Submitter: |
Retrieved at: 19/03/10 @ 00:11:41 Last updated at: 17/02/12 @ 15:57:23 Categories (1): Provider: SEED
The annotation clearing house exposes and compares annotations for essentially identical microbial proteins from different resources such as the SEED, UniProt/Swiss Prot, JCVI, U Maryland, NCBI, PATRIC, etc.
With either an ID or a protein sequence you can access the annotations
WSDL Location: http://ws.theseed.org/wsdl_ach.cgi Service Enpoint: http://seed-viewer.theseed.org/webservices_ACH.cgi |
