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Items tagged with " analysis" (3)

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Workflows (3)

Taverna 2

Original Uploader

Stian Soiland-Reyes

Biomart and EMBOSS analysis (v1)

Created: 03/07/09 @ 14:18:28 | Last updated: 03/07/09 @ 14:19:33

Credits: Stian Soiland-Reyes

Attributions: BiomartAndEMBOSSAnalysis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 45 times | Downloaded: 9 times

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scufl

Original Uploader

Angela Luijf

DNA sequence analysis pilot (Blat) (v2)

Created: 20/11/09 @ 10:50:13 | Last updated: 30/11/09 @ 09:35:39

Credits: Angela Luijf Barbera van Schaik Glatard

Attributions: DNA sequence analysis pilot

License: Creative Commons Attribution-Share Alike 3.0 Unported License

http://amc-app1.amc.sara.nl/twiki/bin/view/ Workflow-based DNA sequence analysis on the Dutch Life Science Grid. This workflow is based on http://www.myexperiment.org/workflows/840 , the last component (Blast analysis) is replaced by Blat analysis

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 28 times | Downloaded: 3 times

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Taverna 1

Original Uploader

Achille

M_Fetch_e-T_phylo_boot - (BETA) (v1)

Created: 10/03/10 @ 15:44:02 | Last updated: 10/03/10 @ 15:49:13

Credits: Achille Hamish McWilliam

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow performs a generic protein sequence analysis. In order to do that a novel protein sequence enters into the software along with a list of known protein identifiers chosen by the biologist to perform a homology search, followed by a multiple sequence alignment and finally a phylogenetic analysis.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 7 times | Downloaded: 0 times

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