About | Mailing List | Publications

Log in | Register | Give us Feedback | Invite

Home
»
Tags
»
cel

Tag Results

Items tagged with "cel" (4)

Note: some items may not be visible to you, due to viewing permissions.

Workflows (4)

Taverna 1

Original Uploader

Paul Fisher

HUMAN Microarray CEL file to candidate pathways (v4)

Created: 03/10/07 @ 18:35:55 | Last updated: 04/04/08 @ 12:14:21

License: Creative Commons Attribution-NoDerivs 3.0 License

This workflow takes in a CEL file and a normalisation method then returns a series of images/graphs which represent the same output obtained using the MADAT software package (MicroArray Data Analysis Tool) [http://www.bioinf.manchester.ac.uk/MADAT/index.html]. Also retruned by this workflow are a list of the top differentialy expressed genes (size dependant on the number specified as input - geneNumber), which are then used to find the candidate pathways which may be influencing the observed ...

Rating: 5.0 / 5 (1 rating) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 1753 times | Downloaded: 1643 times

Tags (12):

View

Download (v4)

Taverna 1

Original Uploader

Paul Fisher

Pathways from Diff Expressed Genes (v3)

Created: 03/10/07 @ 18:36:05 | Last updated: 11/07/08 @ 10:52:01

License: Creative Commons Attribution-Share Alike 3.0 License

Rating: 5.0 / 5 (1 rating) | Versions: 3 | Reviews: 0 | Comments: 1 | Citations: 1

Viewed: 1155 times | Downloaded: 1076 times

Tags (19):

View

Download (v3)

Taverna 1

Original Uploader

Paul Fisher

Microarray CEL file to candidate pathways (v2)

Created: 08/02/08 @ 14:17:23 | Last updated: 14/05/08 @ 15:43:23

Credits: Paul Fisher Saeedeh

License: Creative Commons Attribution-Share Alike 3.0 License

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 796 times | Downloaded: 2 times

Tags (17):

View

Taverna 1

Original Uploader

Paul Fisher

Human Pathways from Diff Expressed Genes (v1)

Created: 08/02/08 @ 14:30:18 | Last updated: 08/02/08 @ 14:30:19

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 License

This workflow takes in probesets from and AffyMetrix micorarray experiment and returns: the genes in the QTL; gene start and end positions; chromosome where genes reside; ensembl trasncripts; SwissProt ids; affy probeset identifiers for chips Mouse430_2 and Mouse430a_2. The final output of the workflow is a list of candidate pathways which are linked to the genes expressed in the microarray data

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 1 | Citations: 0

Viewed: 578 times | Downloaded: 6 times

Tags (17):