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Items tagged with "maxd" (5)

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Pack Microarray data analysis using R

Created: 02/07/08 @ 11:30:06

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Workflows (4)
Taverna 1

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Workflow Query Maxd microarray database (v1)

Created: 14/11/07 @ 16:01:50 | Last updated: 22/11/07 @ 12:06:32

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 License

Query_maxd_microarray_database_5480
Retrieves data from the maxd database given name of data set

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

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Taverna 1

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Workflow Mapping microarray data onto metabolic pathways (v1)

Created: 14/11/07 @ 16:51:26 | Last updated: 22/11/07 @ 10:39:32

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 License

Mapping_microarray_data_onto_metabolic_pathways_3766
This workflow maps microarray data onto metabolic pathway diagrams represented as SBML models drawn using Cell Designer. To run this workflow requires libsbml to be installed into taverna - see http://www.mcisb.org/software/taverna/libsbml/index.html

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 1

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Taverna 1

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Workflow Identification of differential genes using t-tests by R (v2)

Created: 15/04/08 @ 15:37:42 | Last updated: 01/07/08 @ 17:21:18

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 License

Identification_of_differential_genes_using_t-tests_by_r_3052_2
This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data for analysis using t-tests by R. A list of significant differentially expressed genes is then analysed using the Go Term Finder tool which generates a list of GO terms associated with the genes. A CSV file containing the list of significant genes is also generated.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 1

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Taverna 1

Original Uploader

Workflow Identification of differential genes using the LIMMA Bioconductor package within R (v1)

Created: 02/07/08 @ 11:24:12 | Last updated: 02/07/08 @ 11:28:22

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 License

Identification_of_differential_genes_using_t-tests_by_r_1181_1
This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data which are then analysed by the LIMMA Bioconductor package in an R script. This produces a list of significant differentially expressed genes which is then analysed using the Go Term Finder tool to generate a PDF report of the common GO terms associated with the genes. A CSV file containing the list of sign...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

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