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Items tagged with "biomoby" (10)

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Network-member Biomoby

Unique name: biomoby Created: Tuesday 04 December 2007 @ 09:48:10 (GMT)

This is a group for those involved in the Biomoby world.  Whether you are a developer or simple a  user of it, you can join this group to keep up to date on the latest Biomoby news.

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Blob The Data Playground: An Intuitive Workflow Specification Environment

Created: 02/06/08 @ 14:46:40 | Updated: 02/06/08 @ 14:46:40

Credits: User Katy Wolstencroft User Andrew Gibson

License: Creative Commons Attribution-Share Alike 3.0 License

This is a copy of the paper we wrote for the 3rd International Conference on e-Science and Grid Computing 2007 (http://www.escience2007.org/index.asp). It won the Best Paper award!  

File type: application/pdf

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 137 times | Downloaded: 139 times

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Workflow DataBiNS - Data Mining Workflow for Biological Pathways and Non-Synonymous SNPs (v2)

Created: 04/12/07 @ 23:43:01 | Updated: 04/12/07 @ 23:45:25

Credits: User Fong Chun Chan

License: Creative Commons Attribution-Share Alike 3.0 License

Databins_with_kegg_pathways_20321_2
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Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

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Workflow GeneIlluminator_Disambiguate (v2)

Created: 27/02/08 @ 00:43:33 | Updated: 03/03/08 @ 22:11:50

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 License

Geneilluminator_disambiguate_2501_2
Example workflow demonstrating how to use GeneIlluminator_Disambiguate, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service provides GI_Clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. Provides also gene symbol aliases associated to the input gene symbol. (This is the same output as the one from the GeneIlluminator_GetClusters service.) In addition this service takes an Organi...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

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Workflow GeneIlluminator_GetClusters (v2)

Created: 27/02/08 @ 00:46:22 | Updated: 03/03/08 @ 22:11:17

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 License

Geneilluminator_getclusters_23792_2
Example workflow demonstrating how to use GeneIlluminator_GetClusters, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service provides GI_Clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. Provides also gene symbol aliases associated to the input gene symbol. (Use GeneIlluminator_GetGraph for a graphical representation of the clusters or GeneIlluminator_Disambiguate to get the mos...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

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Workflow GeneIlluminator_GetGraph (v2)

Created: 27/02/08 @ 00:48:39 | Updated: 03/03/08 @ 22:10:54

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 License

Geneilluminator_getgraph_2289_2
Example workflow demonstrating how to use GeneIlluminator_GetGraph, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service uses GeneIlluminator to create clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. GeneIlluminator provides also aliases associated to the input gene symbol. Finally, a graphical overview of the clusters and gene symbols is created in SVG format and returned to ...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

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Workflow GeneIlluminator_GetPubMedQuery (v2)

Created: 27/02/08 @ 00:49:44 | Updated: 03/03/08 @ 22:08:39

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 License

Geneilluminator_getpubmedquery_6033_2
Example workflow demonstrating how to use GeneIlluminator_GetPubMedQuery, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service uses GeneIlluminator to create clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. GeneIlluminator provides also aliases associated to the input gene symbol. Finally, using the cluster characteristics it creates a boolean PubMed query that could be used to...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

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Workflow Fetch Dragon images from BioMoby (v2)

Created: 05/03/08 @ 14:09:35 | Updated: 25/03/08 @ 14:41:59

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

Fetch_dragon_images_from_biomoby_1077_2
Fetch images and annotations of snapdragons

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

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Workflow AffyArrayQualityAnalysis (v2)

Created: 13/03/08 @ 14:38:03 | Updated: 13/03/08 @ 14:40:37

Credits: User Pieter Neerincx User Philipg

License: Creative Commons Attribution-Share Alike 3.0 License

Affyarrayqualityanalysis_27323_2
The AffyArrayQualityAnalysis web services provide quality control for raw Affymetrix GeneChip data. They are wrappers around Philip de Groot's quality control R script to provide remote programmatic access. This example workflow demonstrates the use of the AffyArrayQualityAnalysis services. The flow is as follows: * A client executes the AffyArrayQualityAnalysis_submit service with two inputs: a User object and a collection of URLs to CEL files. * The User object contains a user ID, a passw...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

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Workflow AffyArrayNormalization (v1)

Created: 13/03/08 @ 14:47:39 | Updated: 13/03/08 @ 14:47:39

Credits: User Pieter Neerincx User Philipg

License: Creative Commons Attribution-Share Alike 3.0 License

Affyarraynormalization_76_1
The AffyArrayNormalization web services normalise raw Affymetrix GeneChip data. They are wrappers around Philip de Groot's normalization R script to provide remote programmatic access. This example workflow demonstrates the use of the AffyArrayNormalization services. The flow is as follows: * A client executes the AffyArrayNormalization_submit service with two inputs: a User object and a collection of URLs to CEL files. * The User object contains a user ID, a password and an e-mail address....

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

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