Tag Results

Items tagged with "mygrid" (12)

Note: some items may not be visible to you, due to viewing permissions.


Groups (2)

Administrator:

Network-member myGrid

Unique name: myGrid Created: Friday 30 November 2007 @ 12:19:26 (GMT)

People working or contributing to the myGrid project, including the Taverna developers

11 shared items

Members (13):

Tags:
Show View

Administrator:

Network-member Taverna workflow workbench examples

Unique name: tavernaExamples Created: Wednesday 05 March 2008 @ 13:45:09 (GMT)

The workflows visible from this group correspond to the examples from the Taverna workflow workbench

11 shared items

Members (2):

Tags:
Show View

Workflows (10)

Uploader:

Workflow Example of a conditional execution workflow (v1)

Created: 05/03/08 @ 13:55:45 | Updated: 25/03/08 @ 14:46:12

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

Example_of_a_conditional_execution_workflow_7882_1
If the input is true then the string 'foo' is emited, if false then 'bar'. Just a simple example to show how the monster works, so to speak.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 354 times | Downloaded: 247 times

Tags (5):
Show View Download Download (v1)

Uploader:

Workflow BiomartAndEMBOSSAnalysis (v2)

Created: 05/03/08 @ 14:01:16 | Updated: 27/03/08 @ 12:14:09

License: Creative Commons Attribution 3.0 License

Biomartandembossanalysis_32163_2
Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 427 times | Downloaded: 362 times

Tags (6):
Show View Download Download (v2)

Uploader:

Workflow A workflow version of the EMBOSS tutorial (v1)

Created: 05/03/08 @ 14:05:20 | Updated: 25/03/08 @ 14:43:35

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

A_workflow_version_of_the_emboss_tutorial_32367_1
Designed to show the use of EMBOSS based Soaplab services from Taverna, this workflow has no inputs as all initial values are specified as string constants. A sequence set is fetched using the seqret tool, then simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 312 times | Downloaded: 241 times

Tags (4):
Show View Download Download (v1)

Uploader:

Workflow Fetch today's xkcd comic (v1)

Created: 05/03/08 @ 14:08:52 | Updated: 07/04/08 @ 13:54:04

Credits: User Tomoinn User Stian Soiland-Reyes

Attributions:

License: Creative Commons Attribution 3.0 License

Fetch_today_s_xkcd_comic_5577_1
Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow.

Rating: 4.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 395 times | Downloaded: 262 times

Tags (4):
Show View Download Download (v1)

Uploader:

Workflow Fetch Dragon images from BioMoby (v2)

Created: 05/03/08 @ 14:09:35 | Updated: 25/03/08 @ 14:41:59

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

Fetch_dragon_images_from_biomoby_1077_2
Fetch images and annotations of snapdragons

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 443 times | Downloaded: 311 times

Tags (8):
Show View Download Download (v2)

Uploader:

Workflow Demonstration of configurable iteration (v1)

Created: 05/03/08 @ 14:10:51 | Updated: 25/03/08 @ 14:40:27

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

Demonstration_of_configurable_iteration_12320_1
This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 310 times | Downloaded: 237 times

Tags (5):
Show View Download Download (v1)

Uploader:

Workflow Retrieve sequence in EMBL format (v2)

Created: 05/03/08 @ 14:11:18 | Updated: 31/03/08 @ 15:19:06

Credits: User Franck Tanoh User Tomoinn

License: Creative Commons Attribution 3.0 License

Retrieve_sequence_in_embl_format_22581_2
This workflow retrieves a sequence associated with its features in embl format given a sequence id.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 395 times | Downloaded: 299 times

Tags (8):
Show View Download Download (v2)

Uploader:

Workflow Retrieve SNPs from regions around known genes (v1)

Created: 05/03/08 @ 14:12:32 | Updated: 29/07/08 @ 15:18:38

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

Retrieve_snps_from_regions_around_known_genes_12046_1
Given a list of Gene IDs this workflow will query against the Ensembl human genome data to fetch the genomic region for each gene, extend that region by 1000bp in each direction and use this set of ranges, one per gene, to build a query against dbSNP to return the SNP identifier and location information (chromosome name, strand and position)

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 175 times | Downloaded: 140 times

Tags (6):
Show View Download Download (v1)

Uploader:

Workflow Fetch PDB flatfile from RCSB server (v1)

Created: 05/03/08 @ 14:13:24 | Updated: 31/03/08 @ 16:01:41

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

Fetch_pdb_flatfile_from_rcsb_server_27474_1
Given an identifier such as '1crn' fetches the PDB format flatfile and returns the corresponding 3D image of the protein.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 402 times | Downloaded: 458 times

Tags (8):
Show View Download Download (v1)

Uploader:

Workflow GBSeq test (v2)

Created: 05/03/08 @ 14:15:35 | Updated: 31/03/08 @ 15:55:09

Credits: User Franck Tanoh

License: Creative Commons Attribution 3.0 License

Gbseq_test_23328_2
This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 461 times | Downloaded: 314 times

Tags (9):
Show View Download Download (v2)

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Popular Tags
25 tags
[All Tags]

Copyright (c) 2007 - 2008 The University of Manchester and University of Southampton

Front Page

Home

Wiki

Mailing List

Contact Us

API

Publications

Taverna Workflow Workbench

Google Coop Search


Invite people to myExperiment

myGrid

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3