Tag Results

Items tagged with "mygrid" (107)

Note: some items may not be visible to you, due to viewing permissions.


Groups (2)

Network-member myGrid

Unique name: myGrid
Created: Friday 30 November 2007 12:19:26 (UTC)

People working or contributing to the myGrid project, including the Taverna developers. You do not need to join this group to see the shared items. If you are interested in contributing to myGrid or Taverna development or have questions about Taverna, then please email support@mygrid.org.uk

376 shared items   |   0 announcements

Tags:

Network-member Taverna 1.7.1 workflow workbench examples

Unique name: tavernaExamples
Created: Wednesday 05 March 2008 13:45:09 (UTC)

The workflows visible from this group correspond to the examples from the Taverna 1.7.1 workflow workbench

17 shared items   |   0 announcements

Tags:

Packs (2)
Creator

Pack Taverna localworker example pack


Created: 2008-09-27 17:57:39 | Last updated: 2012-03-05 11:33:29

A pack of examples of the calling of Taverna's localworkers. The example workflows make extensive use of the default value mechanism for associating a value with a port of a service.  An alternative set of workflows that use string constants to make the values more explicit is under development.

103 items in this pack

Comments: 0 | Viewed: 421 times | Downloaded: 104 times

Tags:

Creator

Pack Carole's Keynotes


Created: 2008-09-27 19:52:17 | Last updated: 2010-05-08 20:24:47

Carole Goble's 2008 keynote talks that feature myExperiment, in PowerPoint 97-2003 format. All myExperiment presentation can be found on the wiki on http://wiki.myexperiment.org/index.php/Presentations  

5 items in this pack

Comments: 0 | Viewed: 475 times | Downloaded: 53 times

Tags:

Workflows (103)

Workflow Example of a conditional execution workflow (1)

Thumb
If the input is true then the string 'foo' is emited, if false then 'bar'. Just a simple example to show how the monster works, so to speak. Note that this type of workflow is not suitable for Taverna 2. An alternative mechanism is recommended.

Created: 2008-03-05 | Last updated: 2012-05-23

Credits: User Tomoinn

Workflow BiomartAndEMBOSSAnalysis (4)

Thumb
Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2009-09-15 | Last updated: 2015-01-26

Workflow A workflow version of the EMBOSS tutorial (1)

Thumb
Designed to show the use of EMBOSS based Soaplab services from Taverna, this workflow has no inputs as all initial values are specified as string constants. A sequence set is fetched using the seqret tool, then simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.

Created: 2008-03-05 | Last updated: 2008-03-25

Credits: User Tomoinn

Workflow Fetch today's xkcd comic (1)

Thumb
Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow.

Created: 2008-03-05 | Last updated: 2008-04-07

Credits: User Tomoinn User Stian Soiland-Reyes

Attributions:

Workflow Fetch Dragon images from BioMoby (3)

Thumb
Fetch images and annotations of snapdragons

Created: 2008-03-05 | Last updated: 2010-07-14

Credits: User Tomoinn

Workflow Demonstration of configurable iteration (1)

Thumb
This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Created: 2008-03-05 | Last updated: 2008-03-25

Credits: User Tomoinn

Workflow Retrieve sequence in EMBL format (3)

Thumb
This workflow retrieves a sequence associated with its features in embl format

Created: 2009-06-17

Credits: User Franck Tanoh User Tomoinn User Stuart Owen

Workflow Fetch PDB flatfile from RCSB server (1)

Thumb
Given an identifier such as '1crn' fetches the PDB format flatfile and returns the corresponding 3D image of the protein.

Created: 2008-03-05 | Last updated: 2008-03-31

Credits: User Tomoinn

Workflow GBSeq test (2)

Thumb
This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

Created: 2008-03-05 | Last updated: 2008-03-31

Credits: User Franck Tanoh

Workflow Byte[] to string - empty value (1)

Thumb
The beanshell converts the empty string '' to a byte array which is then converted back to the empty string '' by the Byte[]_to_string service.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Choose - no title or message parameters (1)

Thumb
The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The choose service displays a dialog with no title or message. The user is able to choose from the values ['a','b','c','d',e']. When the user presses OK the value the user chose is passed to the answer port of the choose service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Choose - title parameter (1)

Thumb
The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The choose service displays a dialog with 'Some title' but no message. The user is able to choose from the values ['a','b','c','d',e']. When the user presses OK the value the user chose is passed to the answer port of the choose service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Choose - title and message parameters (1)

Thumb
The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The choose service displays a dialog with 'Some title' and with 'Some message'. The user is able to choose from the values ['a','b','c','d',e']. When the user presses OK the value the user chose is passed to the answer port of the choose service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Choose - single element list (1)

Thumb
The split_string_into_string_list_by_regular_expression parses the string 'a' and outputs the list ['a']. The choose service displays a dialog with 'Some title' and 'Some message'. The user is only able to choose the value 'a'. When the user presses OK 'a' is passed to the answer port of the choose service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Concatenate files - echo results and multi... (1)

Thumb
The workflow splits the string 'a,b,c,d,e' into its five elements and saves the individual strings to five temporary files. The file paths to those files are then output by the create_and_populate_temporary_file beanshell. The create_temporary_file beanshell creates a file to which the concatentation can be written. The concatenate_files service concatenates the five files and writes the result to the temporary output file. Because the displayresults port has been given a default value of...

Created: 2008-09-27

Credits: User Alan Williams

Workflow Concatenate files - echo results but no files (1)

Thumb
The split_string_into_string_list_by_regular_expresson outputs an empty list since the string to be split is defaulted to ''. As there are no input values, the create_and_populate_temporary_file generates an empty list. The create_temporary_file beanshell creates a file to which the concatentation can be written. The concatenate_files service does not write anything to the temporary output file. Because the displayresults port has been given a default value of 'true', the empty string is ...

Created: 2008-09-27

Credits: User Alan Williams

Workflow Concatenate files - multiple files (1)

Thumb
The workflow splits the string 'a,b,c,d,e' into its five elements and saves the individual strings to five temporary files. The file paths to those files are then output by the create_and_populate_temporary_file beanshell. The create_temporary_file beanshell creates a file to which the concatentation can be written. The concatenate_files service concatenates the five files and writes the result to the temporary output file. Because the displayresults port has no value, the results are not...

Created: 2008-09-27

Credits: User Alan Williams

Workflow Concatenate two strings (1)

Thumb
The concatenate two strings service takes the strings 'good' and 'bye' and returns the result 'goodbye'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Concatenate two strings - empty strings (1)

Thumb
The concatenate two strings service takes two empty strings and returns an empty string.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Create lots of strings (1)

Thumb
The create lots of strings service returns a list containing a large number of strings.

Created: 2008-09-27 | Last updated: 2008-09-27

Credits: User Alan Williams

Workflow Decode base64 to byte[] (1)

Thumb
The decode base64 to byte[] service decodes the base64 string. The byte array is then converted into the string 'Hello world'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Encode byte[] to base64 (1)

Thumb
The encode byte[] to base 64 service encodes the bytes representing (in the local character set) 'hello'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Execute cmd line app - unix - /bin/ls of t... (1)

Thumb
Note that this workflow only works on Unix systems. The get_temporary_directory beanshell returns the path to the directory in which temporary files are held. This value is passed to the args port of the execute_cmd_line_app service. The command port of that service has been defaulted to '/bin/ls'. The execute_cmd_line_app service runs the /bin/ls command on the temporary directory. The result is passed to its result port and then to the out port of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Execute cmd line app - unix - /bin/ls -R o... (1)

Thumb
Note that this workflow only works on Unix systems. The get_temporary_directory beanshell returns the path to the directory in which temporary files are held. This value is passed to the create_and_populate_list beanshell which creates a list of '-R' and the path. The resultant list is passed to the args port of the Execute_cmd_line_app service. The command port of that service has been defaulted to '/bin/ls'. The execute_cmd_line_app service runs the /bin/ls -R command on the temporary ...

Created: 2008-09-27

Credits: User Alan Williams

Workflow Fail if false - false value (1)

Thumb
The fail if true service throws an exception if given the value 'false'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Fail if false - true value (1)

Thumb
The fail if true service executes without an exception if given the value 'true'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Fail if false - non false value (1)

Thumb
The fail if true service executes without an exception if given a non-false value such as 'fred'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Fail if true - true value (1)

Thumb
The fail if true service throws an exception when passed the value true.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Fail if true - false value (1)

Thumb
The fail if true service executes without an exception if given the value 'false'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Fail if true - non true value (1)

Thumb
The fail if true service executes without an exception if given a value that is not true e.g. 'fred'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow FIlter list of strings by regex with a sui... (1)

Thumb
The workflow filters the five element list split from the first service and returns the three elements that match the regular expression.

Created: 2008-09-27

Credits: User Alan Williams

Workflow FIlter list of strings by regex with an un... (1)

Thumb
The workflow filters the five element list split from the first service and returns an empty list as no elements match.

Created: 2008-09-27

Credits: User Alan Williams

Workflow FIlter list of strings by regex extracting... (1)

Thumb
The workflow examines the five element list split from the first service. For each element, if it contains an 'a' followed by two characters, then that triple is included in the output. Thus, for the input ['a','b','abcde','cdef','axy'], only 'abcde' and 'axy' contain a match and so ['abc', 'axy'] is output.

Created: 2008-09-27

Credits: User Alan Williams

Workflow FIlter list of strings by regex extracting... (1)

Thumb
The workflow examines the five element list split from the first service. For each element, if it contains an 'a' followed by two characters, then the two characters after the 'a' are included in the output. Thus, for the input ['a','b','abcde','cdef','axy'], only 'abcde' and 'axy' contain a match and so ['bc', 'xy'] is output.

Created: 2008-09-27

Credits: User Alan Williams

Workflow FIlter list of strings by regex extracting... (1)

Thumb
The workflow examines the five element list split from the first service. For each element, if it contains an 'a' followed by two characters, the second character after the 'a' is included in the output. Thus, for the input ['a','b','abcde','cdef','axy'], only 'abcde' and 'axy' contain a match and so ['c', 'y'] is output.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Get image from URL - only url specified (1)

Thumb
Retrieve the image at http://www.mygrid.org.uk/files/2008/09/dragon-workflow.png using just the url parameter

Created: 2008-09-27

Credits: User Alan Williams

Workflow Get image from URL - url and base specified (1)

Thumb
Retrieve the image at http://www.mygrid.org.uk/files/2008/09/dragon-workflow.png using both the url and base parameters

Created: 2008-09-27

Credits: User Alan Williams

Workflow Get image URLs from HTTP document (1)

Thumb
Retrieve the web page at http://www.mygrid.org.uk/usermanual1.7/user_gettings_started.html and examine it for images. The workflow should return an empty list.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Get image URLs from HTML document and outp... (1)

Thumb
Retrieve the web page at http://www.mygrid.org.uk, examine it for images and output the images.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Get web page from URL - just url (1)

Thumb
Fetches a web page from http://www.mygrid.org.uk/tools using just the url parameter of the service. Note that when viewed, the HTML may not be rendered correctly. However, the HTML may be viewed by rendering the result as plain text.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Get web page from URL - url and base (1)

Thumb
Fetches a web page from http://www.mygrid.org.uk/tools with the base parameter as "http://www.mygrid.org.uk" and the url as "/tools". Note that when viewed, the HTML may not be rendered correctly. However, the HTML may be viewed by rendering the result as plain text.

Created: 2008-09-27

Credits: User Alan Williams

Workflow List files by extension - several answers (1)

Thumb
The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_extension service and the file paths to the three files ending in ".png" are output.

Created: 2008-09-27

Credits: User Alan Williams

Workflow List files by extension - single answer (1)

Thumb
The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_extension service and the file path to the one file ending in ".bin" is output.

Created: 2008-09-27

Credits: User Alan Williams

Workflow List files by extension - no answer (1)

Thumb
The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_extension service. Since no files end in ".fred", an empty list is output.

Created: 2008-09-27

Credits: User Alan Williams

Workflow List files by extension - empty directory (1)

Thumb
The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The empty directory is examined by the List_files_by_extension service. Since no files end in ".png", an empty list is output.

Created: 2008-09-27

Credits: User Alan Williams

Workflow List files by regex - several answers (1)

Thumb
The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_regex service and the file paths matching the regular expression '.*i.*', i.e. those containing an 'i', are output.

Created: 2008-09-27

Credits: User Alan Williams

Workflow List files by regex - single answer (1)

Thumb
The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_regex service and the file path to the one file matching 'c.*' i.e. starting with 'c' is output.

Created: 2008-09-27

Credits: User Alan Williams

Workflow List files by regex - no answer (1)

Thumb
The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_regex service. Since no files match the regular expression 'x.*' i.e. no files have a name that starts with 'x', an empty list is output.

Created: 2008-09-27

Credits: User Alan Williams

Workflow List files by regex - empty directory (1)

Thumb
The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The empty directory is examined by the List_files_by_regex service. Since there are no files, an empty list is output.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Merge string list to string - default sepa... (1)

Thumb
The merge string list to string service takes the list ['a','b','c'] and outputs the string 'a b c'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Merge string list to string - colon separator (1)

Thumb
The merge string list to string service takes the list ['a','b','c'] and using the separator ':' outputs the string 'a:b:c'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Merge string list to string - empty list (1)

Thumb
The merge string list to string service takes an empty list [] and outputs an empty string ''.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Pad numeral with leading 0s - default targ... (1)

Thumb
The pad numeral with leading 0s takes the input '12' and pads it to the default target length of 7, yielding the output '0000012'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Pad numeral with leading 0s - specified ta... (1)

Thumb
The pad numeral with leading 0s takes the input '12' and pads it to the specified target length of 4, yielding the output '0012'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Pad numeral with leading 0s - too short ta... (1)

Thumb
The pad numeral with leading 0s takes the input '12' and because the specified target length of 1 is too short, yields the output '12'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Read GenBank file (1)

Thumb
The Get_web_page_from_URL downloads a file from myExperiment that contains GenBank data. That data is then saved to a temporary file generated by the create_and_populate_temporary_file beanshell. The path to the temporary file is then passed to the Read_GenBank_file service. That service reads the file and converts the GenBank data into Agave format. The result is then sent to the workflow's out port.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Read SwissProt file (1)

Thumb
The Get_web_page_from_URL downloads a file from myExperiment that contains SwissProt data. That data is then saved to a temporary file generated by the create_and_populate_temporary_file beanshell. The path to the temporary file is then passed to the Read_SwissProt_file service. That service reads the file and converts the SwissProt data into Agave format. The result is then sent to the workflow's out port.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Read text file (1)

Thumb
The beanshell write the string 'hello' to a temporary file. The filepath to the temporary file is then passed to the Read_text_file service which reads the file and outputs the string 'hello'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Read text file - several lines (1)

Thumb
The beanshell write the string 'hello' four times separated by a new lineto a temporary file. The filepath to the temporary file is then passed to the Read_text_file service which reads the file and outputs the string 'hello hello hello hello'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Read text file - empty file (1)

Thumb
The beanshell creates an empty temporary file. The filepath to the temporary file is then passed to the Read_text_file service which reads the file and outputs the empty string ''.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Remove duplicate strings (1)

Thumb
The remove duplicate strings service takes the list ['a','b','c','b','a','d'], strips out duplicate strings and outputs the result ['a','b','c','d'].

Created: 2008-09-27

Credits: User Alan Williams

Workflow Remove duplicate strings - empty list (1)

Thumb
The remove duplicate strings service takes the empty list [] and outputs the result [].

Created: 2008-09-27

Credits: User Alan Williams

Workflow Reverse complement DNA (1)

Thumb
The Reverse Complement DNA service takes the DNA sequence, here defaulted to 'gatcctccat' and outputs the corresponding reverse complement sequence, in this example, 'atggaggatc'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Select - no title or message parameters (1)

Thumb
The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The select service displays a dialog with no title or message. The user is able to select from the values ['a','b','c','d',e']. When the user presses OK the value the user selected is passed to the answer port of the select service and so to the output of the workflow. If the user clicks Cancel then a service failure is generated.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Select - title parameter (1)

Thumb
The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The select service displays a dialog with 'Some title' but no message. The user is able to select from the values ['a','b','c','d',e']. When the user presses OK the value the user selected is passed to the answer port of the select service and so to the output of the workflow. If the user clicks Cancel then a service failure is generated.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Select - message parameter (1)

Thumb
The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The select service displays a dialog with no title but with 'Some message'. The user is able to select from the values ['a','b','c','d',e']. When the user presses OK the value the user selected is passed to the answer port of the select service and so to the output of the workflow. If the user clicks Cancel then a service failure is generated.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Select - title and message parameters (1)

Thumb
The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The select service displays a dialog with ''Some title' and 'Some message'. The user is able to select from the values ['a','b','c','d',e']. When the user presses OK the value the user selected is passed to the answer port of the select service and so to the output of the workflow. If the user clicks Cancel then a service failure is generated.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Select - single element list (1)

Thumb
The split_string_into_string_list_by_regular_expression parses the string 'a' and outputs the list ['a']. The select service displays a dialog with 'Some title' and 'Some message'. The user is only able to select the value 'a'. When the user presses OK 'a' is passed to the answer port of the select service and so to the output of the workflow. If the user clicks Cancel then a service failure is generated.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Split string into string list by regular e... (1)

Thumb
The split string into string list by regular expression takes the string 'a,b,c' and using the default regular expression ',' splits it into the list ['a','b','c']

Created: 2008-09-27

Credits: User Alan Williams

Workflow Split string into string list by regular e... (1)

Thumb
The split string into string list by regular expression takes the string 'boo:and:foo' and using the specified regular expression ':' splits it into the list ['boo','and','foo']

Created: 2008-09-27

Credits: User Alan Williams

Workflow Split string into string list by regular e... (1)

Thumb
The split string into string list by regular expression takes the string 'boo:and:foo' and using the specified regular expression 'o' splits it into the list ['b','',':and:f']

Created: 2008-09-27

Credits: User Alan Williams

Workflow String list difference - yielding non-empt... (1)

Thumb
The string list difference service takes in ['a','b','c'] and ['a','e','c'] and returns the list ['b','e'].

Created: 2008-09-27

Credits: User Alan Williams

Workflow String list difference - yielding empty list (1)

Thumb
The string list difference service takes in ['a','b','c'] and ['a','c','b'] and returns the empty list [].

Created: 2008-09-27

Credits: User Alan Williams

Workflow String list intersection - yielding non em... (1)

Thumb
The string list intersection service takes in ['a','b','c'] and ['a','e','c] and returns the list ['a','c'].

Created: 2008-09-27

Credits: User Alan Williams

Workflow String list intersection - yielding empty ... (1)

Thumb
The string list intersection service takes in ['a','b','c'] and ['x','y','z'] and returns the empty list [].

Created: 2008-09-27

Credits: User Alan Williams

Workflow String list union - yielding non-empty list (1)

Thumb
The string list union service takes in ['a','b','c'] and ['a','e','c'] and returns a list equivalent to ['a','b','c','e'].

Created: 2008-09-27

Credits: User Alan Williams

Workflow String list union - yielding empty list (1)

Thumb
The string list union service takes in two empty lists [] and [] and returns an empty list [].

Created: 2008-09-27

Credits: User Alan Williams

Workflow Tell - no parameters (1)

Thumb
The tell service displays an informative dialog with no title or message. When the user presses OK the string 'answer' is passed to the answer port of the tell service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Tell - title parameter (1)

Thumb
The tell service displays an informative dialog with 'Some title' but no message. When the user presses OK the string 'answer' is passed to the answer port of the tell service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Tell - message parameter (1)

Thumb
The tell service displays an informative dialog with no title but with message 'Some message'. When the user presses OK the string 'answer' is passed to the answer port of the tell service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Tell - title and message parameters (1)

Thumb
The tell service displays an informative dialog with no title but with message 'Some message'. When the user presses OK the string 'answer' is passed to the answer port of the tell service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Test always fails - no parameters (1)

Thumb
The test always fails service generates a service failure when no parameter values are supplied.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Test always fails - one parameter (1)

Thumb
The test always fails service generates a service failure when one parameter value is supplied.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Test always fails - two parameters (1)

Thumb
The test always fails service generates a service failure when two parameter values are supplied.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Transcribe DNA (1)

Thumb
The Transcribe DNA service takes the DNA sequence, here defaulted to 'gatcctccat' and outputs the corresponding transcribed RNA sequence, in this example, 'gauccuccau'.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Transform XML - no output file (1)

Thumb
The get_xml_file_from_web service downloads an example xml from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xml_file. The path to the temporary file is passed to the inFileURL port of Transform_XML. The get_xslt_file_from_web service downloads an example xslt file from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xslt_file. The path to the temporary file is passed to the xslFileURL port...

Created: 2008-09-27

Credits: User Alan Williams

Workflow Transform XML - explicit output file (1)

Thumb
The get_xml_file_from_web service downloads an example xml from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xml_file. The path to the temporary file is passed to the inFileURL port of Transform_XML. The get_xslt_file_from_web service downloads an example xslt file from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xslt_file. The path to the temporary file is passed to the xslFileURL port...

Created: 2008-09-27

Credits: User Alan Williams

Workflow Transform XML - output file by extension (1)

Thumb
The get_xml_file_from_web service downloads an example xml from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xml_file. The path to the temporary file is passed to the inFileURL port of Transform_XML. The get_xslt_file_from_web service downloads an example xslt file from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xslt_file. The path to the temporary file is passed to the xslFileURL port...

Created: 2008-09-27

Credits: User Alan Williams

Workflow Warn - no parameters (1)

Thumb
The warn service displays a prompt with no title or message. When the user presses OK the string 'answer' is passed to the answer port of the warn service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Warn - title parameter (1)

Thumb
The warn service displays a warning dialog with 'Some title' but no message. When the user presses OK the string 'answer' is passed to the answer port of the warn service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Warn - message parameter (1)

Thumb
The warn service displays a warning dialog with no title but message 'Some message'. When the user presses OK the string 'answer' is passed to the answer port of the warn service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Warn - title and message parameters (1)

Thumb
The warn service displays a warning dialog with 'Some title' and message 'Some message'. When the user presses OK the string 'answer' is passed to the answer port of the warn service and so to the output of the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Write text file - specified value (1)

Thumb
The beanshell creates an empty temporary file. The filepath to the temporary file is then passed to the Write_text_file service which writes 'hello' into the file. 'hello' is also output by the service.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Write text file - empty string value (1)

Thumb
The beanshell creates an empty temporary file. The filepath to the temporary file is then passed to the Write_text_file service which writes the empty string '' into the file. '' is also output by the service.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Write text file - overwriting content (1)

Thumb
The beanshell creates an empty temporary file. The filepath to the temporary file is then passed to the Write_text_file A service which writes the string 'hello' into the file. After service A has run, service B writes 'goodbye' into the file. The file is then read by the Read_Text_File service and its content, 'goodbye', output by the workflow.

Created: 2008-09-27

Credits: User Alan Williams

Workflow Echo_with_occasional_failure-1 (1)

Thumb
The echo_with_occasional_failure service mostly echoes the string 'hello' to the out port. Sometimes, it throws a service failure.

Created: 2008-09-29

Credits: User Alan Williams

Workflow Flatten list - two depth (1)

Thumb
The flatten_list service takes the list [[['a']], [['b']], [['c']], [['d']]] and, using the default flatten depth of 2, outputs the list [['a'], ['b'], ['c'], ['d'], ['e']].

Created: 2008-09-29

Credits: User Alan Williams

Workflow Flatten list - three depth (2)

Thumb
The flatten_list service takes the list [[['a']], [['b']], [['c']], [['d']],[['e']]] and, using a flatten depth of 3, outputs the list ['a', 'b', 'c', 'd','e'].

Created: 2008-09-29 | Last updated: 2008-09-30

Credits: User Alan Williams

Workflow Extract elements from a list - full extrac... (1)

Thumb
The extract_elements_from_a_list is passed the list ['a','b','c','d','e']. The fromIndex is 0 and the toIndex is 5, so the service outputs an identical list.

Created: 2008-09-29

Credits: User Alan Williams

Workflow Extract elements from a list - single elem... (1)

Thumb
The extract_elements_from_a_list is passed the list ['a','b','c','d','e']. The fromIndex is 2 and the toIndex is 3, so the service outputs the single element list ['c'].

Created: 2008-09-29

Credits: User Alan Williams

Workflow Extract elements from a list - extraction ... (1)

Thumb
The extract_elements_from_a_list is passed the list [['a','b','c', 'd'], ['e','f','g','h'],['i','j','k','l'],['m','n','o','p']] with fromIndex of 1 and toIndex of 3 and the default depth of 1, will output the list [['b','c'], ['f','g'],['j','k'],['n','o'']] as it is the list with depth 1 e.g. ['e','f','g','h'] that are considered.

Created: 2008-09-29

Credits: User Alan Williams

Workflow Extract elements from a list - extraction ... (1)

Thumb
The extract_elements_from_a_list is passed the list [['a','b','c', 'd'], ['e','f','g','h'],['i','j','k','l'],['m','n','o','p']] with fromIndex of 1 and toIndex of 3 and depth 2, will output the list [['e','f','g','h'],['i','j','k','l']] as it is the outermost list i.e. that with depth 2 that is considered.

Created: 2008-09-29

Credits: User Alan Williams

Workflow Fetch Dragon images from BioMoby (1)

Thumb
Fetch images and annotations of snapdragons

Created: 2010-07-14 | Last updated: 2010-07-14

Credits: User EdwardKawas User Tomoinn

Attributions: Workflow Fetch Dragon images from BioMoby

What is this?

Linked Data

Non-Information Resource URI: http://www.myexperiment.org/tags/662


Alternative Formats

HTML
RDF
XML