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Items tagged with "data integration" (11)

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Groups (3)

Administrator:

Allyson Lister

SyMBA: Systems and Molecular Biology Data and Metadata Archive

Unique name: symba Created: Wednesday 12 September 2007 @ 11:30:41 (BST)

SyMBA was originally developed to be a high-throughput data archive for the data created at CISBAN at Newcastle University, but is now a project applicable for many in the biology & bioinformatics community. New developers are always welcome. SyMBA is a data and metadata archive that is based on the Functional Genomics Object Model(FuGE) and which archives, stores, and retrieves raw high-t...

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Paul Dobson

ONDEX Graphs

Unique name: ONDEX Created: Tuesday 10 February 2009 @ 10:45:09 (GMT)

A group for sharing ONDEX graphs in oxl format http://ondex.sourceforge.net/ http://www.ondex.org/

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Paul Dobson

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Paul Fisher

SabrOndexProject

Unique name: SabrOndex Created: Friday 27 February 2009 @ 15:42:55 (GMT)

This group is set up for the SABR Ondex-Taverna integration http://www.ondex.org

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Paul Fisher

Ondex and Taverna Tutorial

Created: 22/10/09 @ 13:50:54 | Last updated: 22/10/09 @ 13:51:52

Credits: George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Biological Data Integration Using Ondex and Taverna: A Tutorial 25/26th November 2009 The University of Manchester The Ondex SABR project (http://ondex.org/sabr.html) invite you to a two-day tutorial that aims to show participants how to use Ondex and Taverna to perform common biological data collection, integration and visualisation tasks.

File type: Word document

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Workflows (7)

Taverna 1

Original Uploader

Paul Fisher

Get Concepts (v1)

Created: 27/02/09 @ 16:33:40

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow gets all the concepts in an Ondex graph, using a given graph id

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

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Taverna 1

Original Uploader

Paul Fisher

Get CVs (v1)

Created: 27/02/09 @ 16:38:40

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow lets users retrive all controlled vocabularies for a given Ondex graph

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Taverna 1

Original Uploader

Paul Fisher

Get Evidence Types (v1)

Created: 27/02/09 @ 16:40:23 | Last updated: 27/02/09 @ 16:40:24

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow gets all the evidence types within a specified Ondex graph

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Taverna 1

Original Uploader

Paul Fisher

Get graphs (v2)

Created: 27/02/09 @ 16:41:49 | Last updated: 05/11/09 @ 12:38:23

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thiw workflow simply returns all the Ondex graphs that are present on a given server (where the web service is)

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

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Taverna 1

Original Uploader

Paul Fisher

Get Graphs of Name (v1)

Created: 27/02/09 @ 16:42:36 | Last updated: 27/02/09 @ 16:42:37

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow gets the Ondex graphs relating to a specified name

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Taverna 1

Original Uploader

Paul Fisher

Get relations (v1)

Created: 27/02/09 @ 16:45:40 | Last updated: 27/02/09 @ 16:45:41

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow gets all the realtions from a given Ondex graph

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Taverna 1

Original Uploader

Paul Fisher

Pathways and Gene annotations for QTL region (v2)

Created: 19/10/09 @ 12:39:05 | Last updated: 20/11/09 @ 14:04:41

Credits: Paul Fisher

Attributions: Pathways and Gene annotations for QTL region

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the Pig, Sus scrofa. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway ...

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