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Items tagged with "protein structure" (6)

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Workflows (6)
Taverna 1

Original Uploader

Workflow Fetch PDB flatfile from RCSB server (v1)

Created: 25/01/08 @ 11:52:38 | Last updated: 05/03/08 @ 16:11:20

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 License

Fetch_pdb_flatfile_from_rcsb_server_26862_1
Given aPDB identifier such as '1crn', this workflow fetches the PDB format flatfile from the RCSB

Rating: 5.0 / 5 (1 rating) | Versions: 1 | Reviews: 1 | Comments: 2 | Citations: 0

Viewed: 407 times | Downloaded: 306 times

Tags (2):

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Taverna 1

Original Uploader

Workflow Fetch PDB flatfile from RCSB server (v1)

Created: 05/03/08 @ 14:13:25 | Last updated: 31/03/08 @ 16:01:42

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 License

Fetch_pdb_flatfile_from_rcsb_server_27474_1
Given an identifier such as '1crn' fetches the PDB format flatfile and returns the corresponding 3D image of the protein.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 575 times | Downloaded: 901 times

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Taverna 1

Original Uploader

Workflow Structure_or_ID (v1)

Created: 06/06/08 @ 05:57:31

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 License

Structure_or_id_20492_1
Given a structure or structure entry identifer (e.g. PDB:1crn), return the structure in PDB format. If a structure identifier, in database:identifier format, is input the EBI's WSDbfetch web service (see http://www.ebi.ac.uk/Tools/webservices/services/dbfetch) is used to retrive the structure in PDB format. Otherwise the input is assumed to be a formated structure and is passed through to the output.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 230 times | Downloaded: 221 times

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Taverna 1

Original Uploader

Workflow EBI_DaliLite (v1)

Created: 07/06/08 @ 17:16:37

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 License

Ebi_dalilite_18781_1
Pairwise structure comparison using the DaliLite tool. The EBI's WSDaliLite web service (see http://www.ebi.ac.uk/Tools/webservices/services/dalilite) is used to access the tool.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 217 times | Downloaded: 208 times

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Taverna 1

Original Uploader

Workflow mustang provides structural alignment of two proteins (v3)

Created: 20/08/08 @ 14:41:22 | Last updated: 25/08/08 @ 15:40:46

Credits: User Steffen Möller

Attributions: Workflow Fetch PDB flatfile from RCSB server

License: Creative Commons Attribution-Share Alike 3.0 License

Mustang_provides_structural_alignment_of_two_proteins_3114_3
This workflow experiments with the partial execution of jobs on a computational grid. The workflow elements "mustang" and "boxshade" are executed on grid nodes. Access to these resources is orchestrated with the plugin available on http://grid.inb.uni-luebeck.de. Please contact the author of this workflow for access permissions.

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 246 times | Downloaded: 172 times

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Taverna 1

Original Uploader

Workflow Structural alignment of arbitrary number of protein structures. (v1)

Created: 02/09/08 @ 14:59:23 | Last updated: 02/09/08 @ 14:59:24

Credits: User Steffen Möller User Fxtentacle

Attributions: Workflow Fetch PDB flatfile from RCSB server

License: Creative Commons Attribution-Share Alike 3.0 License

Structural_alignment_of_arbitrary_number_of_protein_structures
This grid-executed Mustang application performs a structural alignment of protein sequences. The number of arguments is variable, in principle, but is shown here for three. The application is executed via the Taverna-ARC plugin on a machine of the NorduGrid. Although your machine can be a part of it, you may prefer to wait for a later version of that interface that does not require grid certificates.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 170 times | Downloaded: 97 times

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