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Hamish McWilliam

EBI_InterProScan_tmhmm_signalp (v4)

Created: 01/06/08 @ 11:21:46 | Last updated: 26/10/08 @ 20:50:11

Credits: Hamish McWilliam

Attributions: EBI_InterProScan

License: Creative Commons Attribution 3.0 Unported License

Use the TMHMM and SignalP methods of InterProScan to perform transmembrane and signal peptide prediction. The EBI's InterProScan web service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan) is used.

Rating: 0.0 / 5 (0 ratings) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 112 times | Downloaded: 42 times

Original Uploader

Hamish McWilliam

tmap_single_sequence (v2)

Created: 01/06/08 @ 14:27:13 | Last updated: 02/06/08 @ 21:38:13

Credits: Hamish McWilliam

Attributions: Sequence_or_ID

License: Creative Commons Attribution 3.0 Unported License

Simple workflow using tmap to find transmembrane regions, using a single sequence as input.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 68 times | Downloaded: 23 times

Original Uploader

Hamish McWilliam

EBI_InterProScan (v3)

Created: 31/05/08 @ 11:38:58 | Last updated: 26/10/08 @ 20:33:34

Credits: Hamish McWilliam

License: Creative Commons Attribution 3.0 Unported License

Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the sig...

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 1 | Citations: 0

Viewed: 267 times | Downloaded: 166 times