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Peter Li

Microarray data analysis using R

Created: 02/07/08 @ 11:30:06

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Peter Li

Identification of differential genes using the LIMMA Bioconductor package within R (v1)

Created: 02/07/08 @ 11:24:12 | Last updated: 02/07/08 @ 11:28:22

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 License

This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data which are then analysed by the LIMMA Bioconductor package in an R script. This produces a list of significant differentially expressed genes which is then analysed using the Go Term Finder tool to generate a PDF report of the common GO terms associated with the genes. A CSV file containing the list of sign...

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