User: Barbera van Schaik

Name: Barbera van Schaik

Joined: Wednesday 20 August 2008 14:14:54 (UTC)

Last seen: Monday 11 July 2011 11:23:30 (UTC)

Email (public): b.d.vanschaik [at] amc.uva.nl

Website: http://www.bioinformaticslaboratory.nl/

Location: Amsterdam, Netherlands

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Barbera van Schaik has been credited 4 times

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Other contact details:

Academic Medical Center / University of Amsterdam
Bioinformatics Laboratory
Clinical Epidemiology, Biostatistics and Bioinformatics (KEBB)

PO Box 22660 (J1B.205)
1100 DD Amsterdam
The Netherlands

Phone: (+31) 20 - 566 47 11

Interests:

data analysis, teaching, programming, databases, visualisation, algorithms, human transcriptome, genome analysis, transposons, high throughput sequence analysis

Field/Industry: Research

Occupation/Role(s): Bioinformatician

Organisation(s):

Academic Medical Center

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Taverna 1

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Barbera van Schaik

Sff2Fasta_Blast_Blat_ParseBlast (1)

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Blast and Blat Roche 454 sequences against a reference database on the Dutch Life Science Grid Conversion of Roche 454 sequences to fasta Blat sequences against a database Blast sequences against a database Parse Blast results http://www.bioinformaticslaboratory.nl/

Created: 2010-09-22 | Last updated: 2010-09-22

Credits: Barbera van Schaik Antoine van Kampen Angela Luijf Silvia Olabarriaga

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Taverna 1

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Barbera van Schaik

Sff2Fasta_Blat (1)

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Blat Roche 454 sequences against a reference database on the Dutch Life Science Grid Conversion of Roche 454 sequences to fasta Blat sequences against a database http://www.bioinformaticslaboratory.nl/

Created: 2010-09-22 | Last updated: 2010-09-22

Credits: Barbera van Schaik Antoine van Kampen Angela Luijf Silvia Olabarriaga

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Taverna 1

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Barbera van Schaik

Sff2Fasta_Blast_ParseBlast (1)

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Blast Roche 454 sequences against a reference database on the Dutch Life Science Grid Conversion of Roche 454 sequences to fasta Blast sequences against a database Parse Blast results http://www.bioinformaticslaboratory.nl/

Created: 2010-09-22 | Last updated: 2010-09-22

Credits: Barbera van Schaik Antoine van Kampen Angela Luijf Silvia Olabarriaga

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Taverna 1

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Angela Luijf

DNA sequence analysis pilot (Blat) (2)

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http://amc-app1.amc.sara.nl/twiki/bin/view/ Workflow-based DNA sequence analysis on the Dutch Life Science Grid. This workflow is based on http://www.myexperiment.org/workflows/840 , the last component (Blast analysis) is replaced by Blat analysis

Created: 2009-11-20 | Last updated: 2009-11-30

Credits: Angela Luijf Barbera van Schaik Glatard

Attributions: DNA sequence analysis pilot

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