My role as a biologist and bioinformatician in e-science is to help increase the usefulness of emerging information technologies for biology, while experimenting with new ways to increase insight into mechanisms related to structure and function of DNA in the cell. I experiment with technologies such as workflow, knowledge extraction from text, semantic web and virtual research environments such as myExperiment.

More information on the blog below (originally uploaded as an example for the 'NBIC on workflows' workshop in Lunteren, the Netherlands, March 2008).

http://www.myexperiment.org/blogs/15

Other contact details:

Also see my web page at the University of Amsterdam: http://home.medewerker.uva.nl/m.roos1

Interests:

Structure/function relationship of DNA in the cell, e-science, automated support for modeling biological mechanisms by knowledge extraction and semantic web technology.

Field/Industry: Biology

Occupation/Role(s): PhD, e-(bio)scientist (biology 'power-user'), biology e-Science liaison for NBIC and e-Science organisations

Organisation(s):

Leiden University Medical Centre
University of Amsterdam
NBIC
OMII-UK / myGrid

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Alex Voss

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Alex Voss

Joined: Thursday 26 July 2007 10:43:50 (UTC)

I shall soon be starting my post as a SICSA Advanced Research Fellow in the School of Computer Science at the University of St Andrews.

Last active:Monday 09 May 2011 13:21:40 (UTC)

Website:http://www.alexandervoss.de | Email (public):alex.voss [at] ncess.ac.uk

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Andrew Gibson

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Andrew Gibson

Joined: Tuesday 24 July 2007 10:17:42 (UTC)

My background is in biology, and I am now mostly interested in developing emerging technologies from computer science and trying to make them more accessible to scientists, and as such am interested in what myExperiment is doing.

Last active:Wednesday 27 January 2010 09:08:34 (UTC)

Email (public):gibson [at] uva.nl

Field/Industry:Academia | Occupation/Role(s):Postdoctoral Researcher

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Anika Joecker

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Anika Joecker

Joined: Monday 13 August 2007 15:34:31 (UTC)

I am a Postdoc and teamleader of the bioinformatics group at the Molecular Genome Analysis division at the German Cancer Research Center in Heidelberg, Germany. Currently I am working on the analysis of Next-Generation Sequencing data, statistical analysis of Microspot Immunoassays and data integration. Before I joined the DKFZ I was a PHD student in the group of Heiko Schoof at the Max-Planck...

Last active:Thursday 15 March 2012 13:50:53 (UTC)

Website:http://www.dkfz.de/en/mga/Groups/Bioinformatics.html | Email (public):ajoecker [at] gmx.de

Field/Industry:Cancer research | Occupation/Role(s):Postdoc and Teamleader

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Antoine van Kampen

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Antoine van Kampen

Joined: Monday 23 July 2007 13:05:34 (UTC)

See http://www.bioinformaticslaboratory.nl or http://www.nbic.nl

Last active:Tuesday 12 January 2010 14:06:34 (UTC)

Website:http://www.bioinformaticslaboratory.nl | Email (public):a.h.vankampen [at] amc.uva.nl

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Antoon Goderis

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Antoon Goderis

Joined: Tuesday 31 July 2007 17:23:00 (UTC)

Forget Poirot, how about an infamous Belgian

Last active:Monday 27 July 2009 09:48:55 (UTC)

Website:http://www.cs.man.ac.uk/~goderisa

Occupation/Role(s):Former member of the myExperiment project

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Aylin Metzner

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Aylin Metzner

Joined: Tuesday 18 August 2015 09:30:18 (UTC)

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Last active:Friday 28 August 2015 08:34:46 (UTC)

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Barbera van Schaik

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Barbera van Schaik

Joined: Wednesday 20 August 2008 14:14:54 (UTC)

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Last active:Monday 11 July 2011 11:23:30 (UTC)

Website:http://www.bioinformaticslaboratory.nl/ | Email (public):b.d.vanschaik [at] amc.uva.nl

Field/Industry:Research | Occupation/Role(s):Bioinformatician

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Barend

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Barend

Joined: Thursday 16 July 2009 11:09:26 (UTC)

The reason I joined MyExperiment is that I believe that such an environment, when properly supported by in-text semantic technologies could drive international collaboration, e-science, but notably community annotation of dispersed biological resources, that is why we started the Concept Web Alliance, with several of the founders of MyExperiment at the table. Since October 2009 I am the head o...

Last active:Friday 18 March 2011 09:17:59 (UTC)

Website:http://www.biosemantics.org | Email (public):barend.mons [at] nbic.nl

Field/Industry:Bioinformatics, computational biology, Concept Web | Occupation/Role(s):Associate Professor, Head of the BioAssist Program of NBIC

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bgood

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bgood

Joined: Wednesday 03 October 2007 01:22:33 (UTC)

"I have no plans to take over the earth"

Last active:Wednesday 28 May 2008 21:42:41 (UTC)

Website:http://i9606.blogger.com | Email (public):goodb [at] interchange.ubc.ca

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Carole Goble

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Carole Goble

Joined: Monday 23 July 2007 11:01:06 (UTC)

I work on myExperiment.

Last active:Tuesday 10 March 2020 09:12:52 (UTC)

Website:http://www.cs.man.ac.uk/~carole/ | Email (public):carole [at] cs.man.ac.uk

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Christine Chichester

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Christine Chichester

Joined: Tuesday 04 August 2009 10:30:11 (UTC)

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Last active:Tuesday 02 June 2015 08:41:21 (UTC)

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David De Roure

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David De Roure

Joined: Saturday 21 July 2007 07:26:51 (UTC)

Dave De Roure is a Professor of e-Research in the Oxford e-Research Centre and National Strategic Director for e-Social Science. Closely involved in the UK e-Science programme, his projects draw on Web 2.0, Semantic Web, workflow and pervasive computing technologies and he focuses on the co-evolution of digital technologies and research methods in and between multiple disciplines. The...

Last active:Thursday 11 April 2019 07:12:39 (UTC)

Website:http://www.oerc.ox.ac.uk/people/dder | Email (public):david.deroure [at] oerc.ox.ac.uk

Field/Industry:e-Research | Occupation/Role(s):Director of Oxford e-Research Centre

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David Withers

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David Withers

Joined: Friday 20 July 2007 13:55:39 (UTC)

I'm a software engineer working on the Taverna and myExperiment projects.

Last active:Sunday 10 April 2016 21:12:17 (UTC)

Email (public):david.withers [at] manchester.ac.uk

Field/Industry:Computer Science | Occupation/Role(s):Software Engineer

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Dennis Leenheer

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Dennis Leenheer

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Dmitry Katsubo

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Dmitry Katsubo

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Field/Industry:BioInformatics | Occupation/Role(s):Scientific Developer

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Don Cruickshank

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Don Cruickshank

Joined: Monday 23 July 2007 09:14:48 (UTC)

I am a myExperiment developer.

Last active:Wednesday 19 April 2023 12:23:47 (UTC)

Website:http://www.ecs.soton.ac.uk/people/dgc | Email (public):dgc [at] ecs.soton.ac.uk

Occupation/Role(s):Computer Scientist

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Douglas B. Kell

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Douglas B. Kell

Joined: Friday 27 July 2007 15:14:40 (UTC)

I previously directed the Manchester Centre for Integrative Systems Biology (www.mcisb.org/). After 5 years as CEO of the UK BBSRC I have returned to full-time research.

Last active:Monday 24 June 2019 14:59:47 (UTC)

Website:http://dbkgroup.org/ | Email (public):dbk [at] manchester.ac.uk

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Duncan Hull

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Duncan Hull

Joined: Friday 20 July 2007 17:05:02 (UTC)

I'm one of Dougs Thugs and a user advocate for myExperiment.

Last active:Friday 06 May 2011 11:02:58 (UTC)

Website:http://duncan.hull.name

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Eelke van der Horst

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Eelke van der Horst

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Eleni

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Eleni

Joined: Tuesday 12 July 2011 15:49:53 (UTC)

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Last active:Thursday 02 August 2018 14:28:05 (UTC)

Email (public):e.mina [at] lumc.nl

Field/Industry:Bioinformatics

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Elizaveta Besedina

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Elizaveta Besedina

Joined: Friday 24 July 2015 12:57:26 (UTC)

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Last active:Thursday 11 February 2016 16:33:05 (UTC)

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Francesco Ferrari

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Francesco Ferrari

Joined: Thursday 10 September 2009 14:24:23 (UTC)

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Franck Tanoh

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Franck Tanoh

Joined: Wednesday 01 August 2007 15:21:20 (UTC)

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Frank Terpstra

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Frank Terpstra

Joined: Tuesday 04 December 2007 13:15:30 (UTC)

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Website:http://staff.science.uva.nl/~ftrpstra | Email (public):ftrpstra [at] science.uva.nl

Occupation/Role(s):PhD student

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George

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George

Joined: Wednesday 12 December 2007 01:01:03 (UTC)

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Last active:Tuesday 17 April 2012 13:27:53 (UTC)

Email (public):georgina.moulton [at] manchester.ac.uk

Field/Industry:Bio/Health Informatics Education and Development | Occupation/Role(s):Education and Development Fellow

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Glatard

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Glatard

Joined: Tuesday 04 March 2008 14:08:05 (UTC)

Interested in workflows through various projects.

Last active:Friday 10 June 2016 10:25:30 (UTC)

Website:http://www.creatis.insa-lyon.fr/~glatard | Email (public):glatard [at] creatis.insa-lyon.fr

Occupation/Role(s):researcher

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Harish Dharuri

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Harish Dharuri

Joined: Thursday 07 July 2011 10:07:34 (UTC)

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Last active:Monday 16 December 2013 17:09:42 (UTC)

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Ilkay Altintas

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Ilkay Altintas

Joined: Thursday 27 March 2008 21:24:56 (UTC)

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Last active:Wednesday 23 October 2013 16:12:25 (UTC)

Website:http://users.sdsc.edu/~altintas | Email (public):altintas [at] sdsc.edu

Field/Industry:Computer Science | Occupation/Role(s):Director, Scietific Workflow Automation Tech. Lab.

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Inda

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Inda

Joined: Thursday 31 January 2008 09:45:14 (UTC)

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Last active:Friday 08 February 2008 19:52:21 (UTC)

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Ishtiaq AHMAD

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Ishtiaq AHMAD

Joined: Friday 23 October 2009 13:25:38 (UTC)

Developing Data Analysis Framwork to execute individual bioinformatics tools and workflows in parallel computational environment such as GRID or local cluster.

Last active:Thursday 08 December 2011 19:36:27 (UTC)

Website:http://www.biomac.nl | Email (public):I.Ahmad [at] rug.nl

Field/Industry:Proteomics related Bioinformatics | Occupation/Role(s):Scientific Programer

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Jano van Hemert

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Jano van Hemert

Joined: Wednesday 08 August 2007 16:05:24 (UTC)

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Last active:Thursday 05 February 2009 16:04:05 (UTC)

Website:http://www.vanhemert.co.uk/ | Email (public):jvhemert [at] nesc.ac.uk

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Jiten Bhagat

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Jiten Bhagat

Joined: Thursday 02 August 2007 15:44:50 (UTC)

Your friendly neighbourhood BioCatalogue and myExperiment developer

Last active:Sunday 08 December 2013 12:11:44 (UTC)

Email (public):jits [at] cs.man.ac.uk

Occupation/Role(s):Software Developer/Engineer

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Jose Enrique Ruiz

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Jose Enrique Ruiz

Joined: Tuesday 08 March 2011 00:23:14 (UTC)

One of the best bug makers around..

Last active:Monday 21 September 2015 07:41:28 (UTC)

Website:http://amiga.iaa.es/p/67-jose-enrique-ruiz.htm | Email (public):jer [at] iaa.es

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Juandesant

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Juandesant

Joined: Wednesday 25 January 2012 16:55:07 (UTC)

Being in the web since always, now using it to provide astronomical content and methodologies.

Last active:Friday 30 January 2015 14:54:55 (UTC)

Website:http://amiga.iaa.es/p/49-juan-de-dios-santander.htm | Email (public):jdsant [at] iaa.es

Field/Industry:Astronomy | Occupation/Role(s):VIA-SKA Project Manager / AMIGA DB Radio Astronomer

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Jun Zhao

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Jun Zhao

Joined: Friday 20 July 2007 17:29:49 (UTC)

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Last active:Tuesday 16 February 2010 13:36:39 (UTC)

Field/Industry:Research/Biological informatics | Occupation/Role(s):Research Officer

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Junzhao

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Junzhao

Joined: Friday 04 May 2012 11:41:59 (UTC)

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Last active:Friday 04 April 2014 10:30:18 (UTC)

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Katerina Nosikova

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Katerina Nosikova

Joined: Friday 24 July 2015 13:00:02 (UTC)

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Katy Wolstencroft

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Katy Wolstencroft

Joined: Friday 20 July 2007 18:31:02 (UTC)

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Last active:Friday 09 March 2018 10:20:10 (UTC)

Website:http://www.mygrid.org.uk | Email (public):k.j.wolstencroft [at] liacs.leidenuniv.nl

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Kostas

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Kostas

Joined: Tuesday 23 November 2010 10:13:49 (UTC)

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Kristina Hettne

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Kristina Hettne

Joined: Monday 03 August 2009 09:00:59 (UTC)

I am a bioinformatician working in the field of biosemantics

Last active:Sunday 26 February 2017 22:18:45 (UTC)

Website:http://www.biosemantics.org/ | Email (public):k.m.hettne [at] lumc.nl

Field/Industry:Academic | Occupation/Role(s):Scientific Researcher

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LourdesVM

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LourdesVM

Joined: Tuesday 07 February 2012 00:20:44 (UTC)

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Last active:Thursday 28 June 2012 22:00:22 (UTC)

Website:http://amiga.iaa.es/p/22-lourdes-verdes-montenegro.htm | Email (public):lourdes [at] iaa.es

Field/Industry:Astrophysics

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M. Scott Marshall

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M. Scott Marshall

Joined: Friday 20 July 2007 23:28:32 (UTC)

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Last active:Friday 27 November 2009 18:08:45 (UTC)

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Magnus Palmblad

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Magnus Palmblad

Joined: Wednesday 25 April 2012 11:51:29 (UTC)

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Last active:Wednesday 30 January 2019 10:30:32 (UTC)

Website:http://www.ms-utils.org | Email (public):n.m.palmblad [at] lumc.nl

Field/Industry:Biomedical | Occupation/Role(s):Principal Investigator

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Mark Borkum

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Mark Borkum

Joined: Friday 20 July 2007 17:38:28 (UTC)

I'm one of the developers and a postgraduate researcher at the School of Chemistry, University of Southampton (The guitar is an Ibanez RG7321)

Last active:Sunday 19 May 2013 12:29:22 (UTC)

Email (public):mib104 [at] ecs.soton.ac.uk

Occupation/Role(s):Researcher

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Matt Lee

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Matt Lee

Joined: Friday 20 July 2007 13:49:53 (UTC)

I hack on myExperiment

Last active:Thursday 15 November 2007 19:05:04 (UTC)

Website:http://myexperiment.org/ | Email (public):mattl [at] myexperiment.org

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Maurice Bouwhuis

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Maurice Bouwhuis

Joined: Wednesday 12 September 2007 12:49:20 (UTC)

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Meik Poschen

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Meik Poschen

Joined: Tuesday 16 October 2007 16:10:09 (UTC)

I am a researcher working at the Manchester eResearch Centre (MeRC) in different interdisciplinary projects, e.g. exploring uptake, use and design of new information and communication technology (Web/Research 2.0 & social sharing/curation, data management, VRE, e-Science, e-Social Science, e-Infrastructures) in various research/academic domains.

Last active:Friday 07 October 2011 11:15:05 (UTC)

Website:http://www.merc.ac.uk/?q=Meik | Email (public):meik.poschen [at] manchester.ac.uk

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Morris Swertz

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Morris Swertz

Joined: Saturday 21 July 2007 11:00:26 (UTC)

I am interested in generating software infrastructures that biologist want to have. To see what I mean, read NRG 8(3):235 or the online MOLGENIS showcase: http://gbic.biol.ru g.nl/supplementary/2007/molgenis_showcase. Next step is integrating MOLGENIS with other projects like Taverna. For example to run the MetaNetwork protocol (NatProt 2(3):658), currently in R, but I will shortly create a Ta...

Last active:Wednesday 18 December 2013 12:49:27 (UTC)

Website:http://www.rug.nl/staff/m.a.swertz | Email (public):m.a.swertz [at] rug.nl

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Nigam Shah

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Nigam Shah

Joined: Thursday 13 August 2009 00:39:08 (UTC)

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Paolo

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Paolo

Joined: Wednesday 30 January 2008 15:25:36 (UTC)

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Website:http://www.cs.man.ac.uk/~pmissier/ | Email (public):pmissier [at] cs.man.ac.uk

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Paolo Romano

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Paolo Romano

Joined: Thursday 02 August 2007 13:36:47 (UTC)

I collect beer bottle labels, you are veery welcome to send some to me, especially from abroad (I mean from outside Italy).

Last active:Thursday 16 May 2013 09:49:19 (UTC)

Website:http://www.paoloromano.it/ | Email (public):paolo.dm.romano [at] gmail.com

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Paul Fisher

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Paul Fisher

Joined: Thursday 26 July 2007 16:46:52 (UTC)

I am currently employed by GlaxoSmithKline (GSK). As a consequence, the workflows developed previously to this employment (before 5th September 2011) may no longer be supported.

Last active:Thursday 11 January 2018 16:39:36 (UTC)

Website:http://twitter.com/#!/paul_r_fisher

Field/Industry:Bioinformatics | Occupation/Role(s):Bioinformatics Scientist

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Peter Li

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Peter Li

Joined: Tuesday 13 November 2007 17:42:19 (UTC)

Still enjoys eating at buffet restaurants. Currently, sampling the cuisine that Hong Kong has to offer. Need to be careful and watch my weight though.

Last active:Tuesday 20 May 2014 13:06:42 (UTC)

Field/Industry:Government agency | Occupation/Role(s):Data Organization Manager

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Pieter Neerincx

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Pieter Neerincx

Joined: Monday 25 February 2008 12:55:28 (UTC)

I have added my ‘abstract’ for the NBIC workshop ‘NBIC on workflows’ as a blog: http://www.myexperiment.org/blogs/26

Last active:Tuesday 02 April 2013 07:22:34 (UTC)

Field/Industry:Biology | Occupation/Role(s):PhD student

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Pieter Neerincx

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Pieter Neerincx

Joined: Monday 25 February 2008 12:55:28 (UTC)

I have added my ‘abstract’ for the NBIC workshop ‘NBIC on workflows’ as a blog: http://www.myexperiment.org/blogs/26

Last active:Tuesday 02 April 2013 07:22:34 (UTC)

Field/Industry:Biology | Occupation/Role(s):PhD student

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Piotr HoÅ‚ubowicz

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Piotr HoÅ‚ubowicz

Joined: Friday 05 August 2011 09:48:11 (UTC)

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Last active:Friday 30 August 2013 14:10:32 (UTC)

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Piter T. de Boer

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Piter T. de Boer

Joined: Thursday 28 May 2009 09:11:26 (UTC)

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Last active:Sunday 31 January 2010 11:38:16 (UTC)

Field/Industry:Computer Science | Occupation/Role(s):Researcher/Engineer

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Polina

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Polina

Joined: Thursday 25 March 2010 10:30:15 (UTC)

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Radhouane

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Radhouane

Joined: Tuesday 16 June 2009 15:38:48 (UTC)

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Ravi

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Ravi

Joined: Wednesday 28 November 2007 21:50:28 (UTC)

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Reinout van Schouwen

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Reinout van Schouwen

Joined: Friday 12 November 2010 09:40:07 (UTC)

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Last active:Wednesday 30 October 2013 14:06:58 (UTC)

Website:http://www.biosemantics.org/ | Email (public):r.m.van_schouwen [at] lumc.nl

Field/Industry:Bioinformatics | Occupation/Role(s):Scientific developer

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Rob Procter

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Rob Procter

Joined: Thursday 11 October 2007 17:39:22 (UTC)

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Last active:Friday 11 October 2019 14:03:41 (UTC)

Website:http://www.ncess.ac.uk/about_us/people/?centre=&person=4 | Email (public):rob.procter [at] ncess.ac.uk

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Sander van boom

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Sander van boom

Joined: Tuesday 09 July 2013 13:17:33 (UTC)

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Last active:Tuesday 06 May 2014 11:14:28 (UTC)

Email (public):sander.van.boom [at] gmail.com

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Shayan Shahand

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Shayan Shahand

Joined: Wednesday 19 October 2011 08:39:02 (UTC)

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Last active:Wednesday 19 October 2011 11:38:05 (UTC)

Website:http://www.bioinformaticslaboratory.nl

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Simon Jupp

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Simon Jupp

Joined: Saturday 21 July 2007 12:34:16 (UTC)

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Last active:Wednesday 11 January 2012 14:32:21 (UTC)

Website:http://www.cs.man.ac.uk/~sjupp | Email (public):simon.jupp [at] manchester.ac.uk

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Sophia katrenko

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Sophia katrenko

Joined: Monday 10 December 2007 21:50:09 (UTC)

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Last active:Monday 10 December 2007 22:03:39 (UTC)

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Stian Soiland-Reyes

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Stian Soiland-Reyes

Joined: Friday 20 July 2007 16:58:17 (UTC)

I am one of the myGrid developers working in University of Manchester, mainly working on Taverna, but also involved in myExperiment development. Most of the workflows I will publish here on myExperiment are either test workflows (that highlight bugs in Taverna!), technique workflows (like how to do iteration or XML parsing) or other people's workflows that again break Taverna in one way or ...

Last active:Thursday 30 June 2022 09:13:52 (UTC)

Website:http://orcid.org/0000-0001-9842-9718 | Email (public):soiland-reyes [at] cs.manchester.ac.uk

Field/Industry:Education | Occupation/Role(s):Technical Architect

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Stuart Owen

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Stuart Owen

Joined: Thursday 08 November 2007 12:11:20 (UTC)

SysMO-DB engineer and developer, and Taverna engineer.

Last active:Friday 07 November 2014 16:34:45 (UTC)

Website:http://www.sysmo-db.org

Field/Industry:Computer Science | Occupation/Role(s):Software Engineer

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Suza Adam

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Suza Adam

Joined: Sunday 19 October 2008 08:59:42 (UTC)

Studied journalism and marketing (BA Communications). Practised investor relations for more than 15 years, focused in hi-tech industries such as IT & telecommunications, advanced materials, healthcare, biotech / life sciences. I am a co-owner of Rapid Technologies which offers high quality low priced rapid diagnostic tests and supporting devices for monitoring human and animal health. O...

Last active:Saturday 05 May 2012 20:33:09 (UTC)

Website:http://www.lifesparks.co.za | Email (public):suza.adam [at] gmail.com

Field/Industry:Life Sciences | Biotechnology | Occupation/Role(s):Business entrepreneur

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Wassinki

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Wassinki

Joined: Monday 25 February 2008 13:11:39 (UTC)

I have received my master's degree in 2005 in computer science. During my masters, I did research on artificial intelligence, multi-agent systems and driving simulation. Currently, I am a Ph.D.student within the Bsik project BioRange at the Human Media Interaction Group at the University of Twente, the Netherlands. My current research is on computer visualisation techniques for life scien...

Last active:Wednesday 29 July 2009 07:05:10 (UTC)

Website:http://hmi.ewi.utwente.nl/tkisis/persoon/Ingo%20Wassink | Email (public):wassinki [at] ewi.utwente.nl

Field/Industry:HCI/Workflow | Occupation/Role(s):PhD student

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Wibisono

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Wibisono

Joined: Wednesday 23 January 2008 14:54:24 (UTC)

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Last active:Thursday 28 May 2009 11:07:36 (UTC)

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