Nl User: Marco Roos

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Name: Marco Roos

Joined: Saturday 21 July 2007 10:43:23 (UTC)

Last seen: Thursday 28 April 2016 21:38:56 (UTC)

Email (public): m.roos [at] lumc.nl

Website: http://www.lumc.nl/con/6020/39898/909290026392525

Location: Leiden, Netherlands

Marco Roos has been credited 48 times

Marco Roos has an average rating of:

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My role as a biologist and bioinformatician in e-science is to help increase the usefulness of emerging information technologies for biology, while experimenting with new ways to increase insight into mechanisms related to structure and function of DNA in the cell. I experiment with technologies such as workflow, knowledge extraction from text, semantic web and virtual research environments such as myExperiment.

More information on the blog below (originally uploaded as an example for the 'NBIC on workflows' workshop in Lunteren, the Netherlands, March 2008).

http://www.myexperiment.org/blogs/15


Other contact details:

Also see my web page at the University of Amsterdam: http://home.medewerker.uva.nl/m.roos1

Interests:

Structure/function relationship of DNA in the cell, e-science, automated support for modeling biological mechanisms by knowledge extraction and semantic web technology.

Field/Industry: Biology

Occupation/Role(s): PhD, e-(bio)scientist (biology 'power-user'), biology e-Science liaison for NBIC and e-Science organisations

Organisation(s):

Leiden University Medical Centre
University of Amsterdam
NBIC
OMII-UK / myGrid

 

Member

User Alex Voss

Joined: Thursday 26 July 2007 10:43:50 (UTC)

I shall soon be starting my post as a SICSA Advanced Research Fellow in the School of Computer Science at the University of St Andrews.

Last active:Monday 09 May 2011 13:21:40 (UTC)

Website:http://www.alexandervoss.de | Email (public):alex.voss [at] ncess.ac.uk

Member

User Andrew Gibson

Joined: Tuesday 24 July 2007 10:17:42 (UTC)

My background is in biology, and I am now mostly interested in developing emerging technologies from computer science and trying to make them more accessible to scientists, and as such am interested in what myExperiment is doing.

Last active:Wednesday 27 January 2010 09:08:34 (UTC)

Email (public):gibson [at] uva.nl

Field/Industry:Academia | Occupation/Role(s):Postdoctoral Researcher

Member

User Anika Joecker

Joined: Monday 13 August 2007 15:34:31 (UTC)

I am a Postdoc and teamleader of the bioinformatics group at the Molecular Genome Analysis division at the German Cancer Research Center in Heidelberg, Germany. Currently I am working on the analysis of Next-Generation Sequencing data, statistical analysis of Microspot Immunoassays and data integration. Before I joined the DKFZ I was a PHD student in the group of Heiko Schoof at the Max-Planck...

Last active:Thursday 15 March 2012 13:50:53 (UTC)

Website:http://www.dkfz.de/en/mga/Groups/Bioinformatics.html | Email (public):ajoecker [at] gmx.de

Field/Industry:Cancer research | Occupation/Role(s):Postdoc and Teamleader

User Antoine van Kampen

Joined: Monday 23 July 2007 13:05:34 (UTC)

See http://www.bioinformaticslaboratory.nl or http://www.nbic.nl

Last active:Tuesday 12 January 2010 14:06:34 (UTC)

Website:http://www.bioinformaticslaboratory.nl | Email (public):a.h.vankampen [at] amc.uva.nl

User Antoon Goderis

Joined: Tuesday 31 July 2007 17:23:00 (UTC)

Forget Poirot, how about an infamous Belgian

Last active:Monday 27 July 2009 09:48:55 (UTC)

Website:http://www.cs.man.ac.uk/~goderisa

Occupation/Role(s):Former member of the myExperiment project

Member

User Aylin Metzner

Joined: Tuesday 18 August 2015 09:30:18 (UTC)

No description

Last active:Friday 28 August 2015 08:34:46 (UTC)

User Barbera van Schaik

Joined: Wednesday 20 August 2008 14:14:54 (UTC)

No description

Last active:Monday 11 July 2011 11:23:30 (UTC)

Website:http://www.bioinformaticslaboratory.nl/ | Email (public):b.d.vanschaik [at] amc.uva.nl

Field/Industry:Research | Occupation/Role(s):Bioinformatician

Member

User Barend

Joined: Thursday 16 July 2009 11:09:26 (UTC)

The reason I joined MyExperiment is that I believe that such an environment, when properly supported by in-text semantic technologies could drive international collaboration, e-science, but notably community annotation of dispersed biological resources, that is why we started the Concept Web Alliance, with several of the founders of MyExperiment at the table. Since October 2009 I am the head o...

Last active:Friday 18 March 2011 09:17:59 (UTC)

Website:http://www.biosemantics.org | Email (public):barend.mons [at] nbic.nl

Field/Industry:Bioinformatics, computational biology, Concept Web | Occupation/Role(s):Associate Professor, Head of the BioAssist Program of NBIC

Member

User bgood

Joined: Wednesday 03 October 2007 01:22:33 (UTC)

"I have no plans to take over the earth"

Last active:Wednesday 28 May 2008 21:42:41 (UTC)

Website:http://i9606.blogger.com | Email (public):goodb [at] interchange.ubc.ca

Member

User Carole Goble

Joined: Monday 23 July 2007 11:01:06 (UTC)

I work on myExperiment.

Last active:Sunday 14 June 2015 11:42:43 (UTC)

Website:http://www.cs.man.ac.uk/~carole/ | Email (public):carole [at] cs.man.ac.uk

User Christine Chichester

Joined: Tuesday 04 August 2009 10:30:11 (UTC)

No description

Last active:Tuesday 02 June 2015 08:41:21 (UTC)

User David De Roure Admin_badge

Joined: Saturday 21 July 2007 07:26:51 (UTC)

Dave De Roure is a Professor of e-Research in the Oxford e-Research Centre and National Strategic Director for e-Social Science. Closely involved in the UK e-Science programme, his projects draw on Web 2.0, Semantic Web, workflow and pervasive computing technologies and he focuses on the co-evolution of digital technologies and research methods in and between multiple disciplines. The...

Last active:Thursday 11 April 2019 07:12:39 (UTC)

Website:http://www.oerc.ox.ac.uk/people/dder | Email (public):david.deroure [at] oerc.ox.ac.uk

Field/Industry:e-Research | Occupation/Role(s):Director of Oxford e-Research Centre

Member

User David Withers

Joined: Friday 20 July 2007 13:55:39 (UTC)

I'm a software engineer working on the Taverna and myExperiment projects.

Last active:Sunday 10 April 2016 21:12:17 (UTC)

Email (public):david.withers [at] manchester.ac.uk

Field/Industry:Computer Science | Occupation/Role(s):Software Engineer

User Dennis Leenheer

Joined: Monday 04 October 2010 12:53:10 (UTC)

No description

Last active:Friday 06 July 2012 09:47:00 (UTC)

User Dmitry Katsubo

Joined: Friday 31 July 2009 14:00:33 (UTC)

No description

Last active:Saturday 23 January 2010 16:05:33 (UTC)

Website:http://www.linkedin.com/in/dkatsubo | Email (public):dmitry.katsubo [at] gmail.com

Field/Industry:BioInformatics | Occupation/Role(s):Scientific Developer

User Don Cruickshank Admin_badge

Joined: Monday 23 July 2007 09:14:48 (UTC)

I am a myExperiment developer.

Last active:Friday 19 January 2018 16:28:42 (UTC)

Website:http://www.ecs.soton.ac.uk/people/dgc | Email (public):dgc [at] ecs.soton.ac.uk

Occupation/Role(s):Computer Scientist

User Douglas B. Kell

Joined: Friday 27 July 2007 15:14:40 (UTC)

I previously directed the Manchester Centre for Integrative Systems Biology (www.mcisb.org/). After 5 years as CEO of the UK BBSRC I have returned to full-time research.

Last active:Friday 24 July 2015 14:14:10 (UTC)

Website:http://dbkgroup.org/ | Email (public):dbk [at] manchester.ac.uk

Member

User Duncan Hull

Joined: Friday 20 July 2007 17:05:02 (UTC)

I'm one of Dougs Thugs and a user advocate for myExperiment.

Last active:Friday 06 May 2011 11:02:58 (UTC)

Website:http://duncan.hull.name

User Eelke van der Horst

Joined: Thursday 07 February 2013 13:55:19 (UTC)

No description

Last active:Monday 15 June 2015 13:20:10 (UTC)

Website:http://www.eelkevanderhorst.nl

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User Eleni

Joined: Tuesday 12 July 2011 15:49:53 (UTC)

No description

Last active:Thursday 02 August 2018 14:28:05 (UTC)

Email (public):e.mina [at] lumc.nl

Field/Industry:Bioinformatics

User Elizaveta Besedina

Joined: Friday 24 July 2015 12:57:26 (UTC)

No description

Last active:Thursday 11 February 2016 16:33:05 (UTC)

User Francesco Ferrari

Joined: Thursday 10 September 2009 14:24:23 (UTC)

No description

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User Franck Tanoh

Joined: Wednesday 01 August 2007 15:21:20 (UTC)

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Last active:Thursday 17 March 2011 10:26:23 (UTC)

User Frank Terpstra

Joined: Tuesday 04 December 2007 13:15:30 (UTC)

No description

Website:http://staff.science.uva.nl/~ftrpstra | Email (public):ftrpstra [at] science.uva.nl

Occupation/Role(s):PhD student

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User George

Joined: Wednesday 12 December 2007 01:01:03 (UTC)

No description

Last active:Tuesday 17 April 2012 13:27:53 (UTC)

Email (public):georgina.moulton [at] manchester.ac.uk

Field/Industry:Bio/Health Informatics Education and Development | Occupation/Role(s):Education and Development Fellow

Member

User Glatard

Joined: Tuesday 04 March 2008 14:08:05 (UTC)

Interested in workflows through various projects.

Last active:Friday 10 June 2016 10:25:30 (UTC)

Website:http://www.creatis.insa-lyon.fr/~glatard | Email (public):glatard [at] creatis.insa-lyon.fr

Occupation/Role(s):researcher

User Harish Dharuri

Joined: Thursday 07 July 2011 10:07:34 (UTC)

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Last active:Monday 16 December 2013 17:09:42 (UTC)

User Ilkay Altintas

Joined: Thursday 27 March 2008 21:24:56 (UTC)

No description

Last active:Wednesday 23 October 2013 16:12:25 (UTC)

Website:http://users.sdsc.edu/~altintas | Email (public):altintas [at] sdsc.edu

Field/Industry:Computer Science | Occupation/Role(s):Director, Scietific Workflow Automation Tech. Lab.

Member

User Inda

Joined: Thursday 31 January 2008 09:45:14 (UTC)

No description

Last active:Friday 08 February 2008 19:52:21 (UTC)

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User Ishtiaq AHMAD

Joined: Friday 23 October 2009 13:25:38 (UTC)

Developing Data Analysis Framwork to execute individual bioinformatics tools and workflows in parallel computational environment such as GRID or local cluster.

Last active:Thursday 08 December 2011 19:36:27 (UTC)

Website:http://www.biomac.nl | Email (public):I.Ahmad [at] rug.nl

Field/Industry:Proteomics related Bioinformatics | Occupation/Role(s):Scientific Programer

User Jano van Hemert

Joined: Wednesday 08 August 2007 16:05:24 (UTC)

No description

Last active:Thursday 05 February 2009 16:04:05 (UTC)

Website:http://www.vanhemert.co.uk/ | Email (public):jvhemert [at] nesc.ac.uk

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User Jiten Bhagat

Joined: Thursday 02 August 2007 15:44:50 (UTC)

Your friendly neighbourhood BioCatalogue and myExperiment developer

Last active:Sunday 08 December 2013 12:11:44 (UTC)

Email (public):jits [at] cs.man.ac.uk

Occupation/Role(s):Software Developer/Engineer

User Jose Enrique Ruiz

Joined: Tuesday 08 March 2011 00:23:14 (UTC)

 One of the best bug makers around..

Last active:Monday 21 September 2015 07:41:28 (UTC)

Website:http://amiga.iaa.es/p/67-jose-enrique-ruiz.htm | Email (public):jer [at] iaa.es

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User Juandesant

Joined: Wednesday 25 January 2012 16:55:07 (UTC)

Being in the web since always, now using it to provide astronomical content and methodologies.

Last active:Friday 30 January 2015 14:54:55 (UTC)

Website:http://amiga.iaa.es/p/49-juan-de-dios-santander.htm | Email (public):jdsant [at] iaa.es

Field/Industry:Astronomy | Occupation/Role(s):VIA-SKA Project Manager / AMIGA DB Radio Astronomer

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User Jun Zhao

Joined: Friday 20 July 2007 17:29:49 (UTC)

No description

Last active:Tuesday 16 February 2010 13:36:39 (UTC)

Field/Industry:Research/Biological informatics | Occupation/Role(s):Research Officer

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User Junzhao

Joined: Friday 04 May 2012 11:41:59 (UTC)

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Last active:Friday 04 April 2014 10:30:18 (UTC)

User Katerina Nosikova

Joined: Friday 24 July 2015 13:00:02 (UTC)

No description

Last active:Saturday 19 December 2015 19:45:52 (UTC)

User Katy Wolstencroft

Joined: Friday 20 July 2007 18:31:02 (UTC)

No description

Last active:Friday 09 March 2018 10:20:10 (UTC)

Website:http://www.mygrid.org.uk | Email (public):k.j.wolstencroft [at] liacs.leidenuniv.nl

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User Kostas

Joined: Tuesday 23 November 2010 10:13:49 (UTC)

No description

Last active:Thursday 08 March 2012 14:15:45 (UTC)

User Kristina Hettne

Joined: Monday 03 August 2009 09:00:59 (UTC)

I am a bioinformatician working in the field of biosemantics

Last active:Sunday 26 February 2017 22:18:45 (UTC)

Website:http://www.biosemantics.org/ | Email (public):k.m.hettne [at] lumc.nl

Field/Industry:Academic | Occupation/Role(s):Scientific Researcher

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User LourdesVM

Joined: Tuesday 07 February 2012 00:20:44 (UTC)

No description

Last active:Thursday 28 June 2012 22:00:22 (UTC)

Website:http://amiga.iaa.es/p/22-lourdes-verdes-montenegro.htm | Email (public):lourdes [at] iaa.es

Field/Industry:Astrophysics

User M. Scott Marshall

Joined: Friday 20 July 2007 23:28:32 (UTC)

No description

Last active:Friday 27 November 2009 18:08:45 (UTC)

User Magnus Palmblad

Joined: Wednesday 25 April 2012 11:51:29 (UTC)

No description

Last active:Wednesday 30 January 2019 10:30:32 (UTC)

Website:http://www.ms-utils.org | Email (public):n.m.palmblad [at] lumc.nl

Field/Industry:Biomedical | Occupation/Role(s):Principal Investigator

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User Mark Borkum

Joined: Friday 20 July 2007 17:38:28 (UTC)

I'm one of the developers and a postgraduate researcher at the School of Chemistry, University of Southampton (The guitar is an Ibanez RG7321)

Last active:Sunday 19 May 2013 12:29:22 (UTC)

Email (public):mib104 [at] ecs.soton.ac.uk

Occupation/Role(s):Researcher

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User Matt Lee

Joined: Friday 20 July 2007 13:49:53 (UTC)

I hack on myExperiment

Last active:Thursday 15 November 2007 19:05:04 (UTC)

Website:http://myexperiment.org/ | Email (public):mattl [at] myexperiment.org

User Maurice Bouwhuis

Joined: Wednesday 12 September 2007 12:49:20 (UTC)

No description

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User Meik Poschen

Joined: Tuesday 16 October 2007 16:10:09 (UTC)

I am a researcher working at the Manchester eResearch Centre (MeRC) in different interdisciplinary projects, e.g. exploring uptake, use and design of new information and communication technology (Web/Research 2.0 & social sharing/curation, data management, VRE, e-Science, e-Social Science, e-Infrastructures) in various research/academic domains.

Last active:Friday 07 October 2011 11:15:05 (UTC)

Website:http://www.merc.ac.uk/?q=Meik | Email (public):meik.poschen [at] manchester.ac.uk

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User Morris Swertz

Joined: Saturday 21 July 2007 11:00:26 (UTC)

I am interested in generating software infrastructures that biologist want to have. To see what I mean, read NRG 8(3):235 or the online MOLGENIS showcase: http://gbic.biol.ru g.nl/supplementary/2007/molgenis_showcase. Next step is integrating MOLGENIS with other projects like Taverna. For example to run the MetaNetwork protocol (NatProt 2(3):658), currently in R, but I will shortly create a Ta...

Last active:Wednesday 18 December 2013 12:49:27 (UTC)

Website:http://www.rug.nl/staff/m.a.swertz | Email (public):m.a.swertz [at] rug.nl

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User Nigam Shah

Joined: Thursday 13 August 2009 00:39:08 (UTC)

No description

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Website:http://www.stanford.edu/~nigam

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User Paolo

Joined: Wednesday 30 January 2008 15:25:36 (UTC)

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Last active:Wednesday 23 October 2013 16:11:28 (UTC)

Website:http://www.cs.man.ac.uk/~pmissier/ | Email (public):pmissier [at] cs.man.ac.uk

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User Paolo Romano

Joined: Thursday 02 August 2007 13:36:47 (UTC)

I collect beer bottle labels, you are veery welcome to send some to me, especially from abroad (I mean from outside Italy).

Last active:Thursday 16 May 2013 09:49:19 (UTC)

Website:http://www.paoloromano.it/ | Email (public):paolo.dm.romano [at] gmail.com

Member

User Paul Fisher

Joined: Thursday 26 July 2007 16:46:52 (UTC)

I am currently employed by GlaxoSmithKline (GSK). As a consequence, the workflows developed previously to this employment (before 5th September 2011) may no longer be supported.

Last active:Thursday 11 January 2018 16:39:36 (UTC)

Website:http://twitter.com/#!/paul_r_fisher

Field/Industry:Bioinformatics | Occupation/Role(s):Bioinformatics Scientist

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User Peter Li

Joined: Tuesday 13 November 2007 17:42:19 (UTC)

Still enjoys eating at buffet restaurants. Currently, sampling the cuisine that Hong Kong has to offer. Need to be careful and watch my weight though.

Last active:Tuesday 20 May 2014 13:06:42 (UTC)

Field/Industry:Government agency | Occupation/Role(s):Data Organization Manager

User Pieter Neerincx

Joined: Monday 25 February 2008 12:55:28 (UTC)

I have added my ‘abstract’ for the NBIC workshop ‘NBIC on workflows’ as a blog: http://www.myexperiment.org/blogs/26

Last active:Tuesday 02 April 2013 07:22:34 (UTC)

Field/Industry:Biology | Occupation/Role(s):PhD student

User Pieter Neerincx

Joined: Monday 25 February 2008 12:55:28 (UTC)

I have added my ‘abstract’ for the NBIC workshop ‘NBIC on workflows’ as a blog: http://www.myexperiment.org/blogs/26

Last active:Tuesday 02 April 2013 07:22:34 (UTC)

Field/Industry:Biology | Occupation/Role(s):PhD student

User Piotr Hołubowicz

Joined: Friday 05 August 2011 09:48:11 (UTC)

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User Piter T. de Boer

Joined: Thursday 28 May 2009 09:11:26 (UTC)

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Field/Industry:Computer Science | Occupation/Role(s):Researcher/Engineer

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Joined: Thursday 25 March 2010 10:30:15 (UTC)

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Joined: Tuesday 16 June 2009 15:38:48 (UTC)

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User Ravi

Joined: Wednesday 28 November 2007 21:50:28 (UTC)

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Last active:Wednesday 19 January 2011 16:31:30 (UTC)

User Reinout van Schouwen

Joined: Friday 12 November 2010 09:40:07 (UTC)

No description

Last active:Wednesday 30 October 2013 14:06:58 (UTC)

Website:http://www.biosemantics.org/ | Email (public):r.m.van_schouwen [at] lumc.nl

Field/Industry:Bioinformatics | Occupation/Role(s):Scientific developer

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User Rob Procter

Joined: Thursday 11 October 2007 17:39:22 (UTC)

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Last active:Sunday 13 July 2014 16:23:08 (UTC)

Website:http://www.ncess.ac.uk/about_us/people/?centre=&person=4 | Email (public):rob.procter [at] ncess.ac.uk

User Sander van boom

Joined: Tuesday 09 July 2013 13:17:33 (UTC)

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Email (public):sander.van.boom [at] gmail.com

User Shayan Shahand

Joined: Wednesday 19 October 2011 08:39:02 (UTC)

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Last active:Wednesday 19 October 2011 11:38:05 (UTC)

Website:http://www.bioinformaticslaboratory.nl

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User Simon Jupp

Joined: Saturday 21 July 2007 12:34:16 (UTC)

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Last active:Wednesday 11 January 2012 14:32:21 (UTC)

Website:http://www.cs.man.ac.uk/~sjupp | Email (public):simon.jupp [at] manchester.ac.uk

User Sophia katrenko

Joined: Monday 10 December 2007 21:50:09 (UTC)

No description

Last active:Monday 10 December 2007 22:03:39 (UTC)

User Stian Soiland-Reyes Admin_badge

Joined: Friday 20 July 2007 16:58:17 (UTC)

I am one of the myGrid developers working in University of Manchester, mainly working on Taverna, but also involved in myExperiment development. Most of the workflows I will publish here on myExperiment are either test workflows (that highlight bugs in Taverna!), technique workflows (like how to do iteration or XML parsing) or other people's workflows that again break Taverna in one way or ...

Last active:Thursday 04 January 2018 11:37:08 (UTC)

Website:http://orcid.org/0000-0001-9842-9718 | Email (public):soiland-reyes [at] cs.manchester.ac.uk

Field/Industry:Education | Occupation/Role(s):Technical Architect

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User Stuart Owen

Joined: Thursday 08 November 2007 12:11:20 (UTC)

SysMO-DB engineer and developer, and Taverna engineer.

Last active:Friday 07 November 2014 16:34:45 (UTC)

Website:http://www.sysmo-db.org

Field/Industry:Computer Science | Occupation/Role(s):Software Engineer

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User Suza Adam

Joined: Sunday 19 October 2008 08:59:42 (UTC)

Studied journalism and marketing (BA Communications). Practised investor relations for more than 15 years, focused in hi-tech industries such as IT & telecommunications, advanced materials, healthcare, biotech / life sciences. I am a co-owner of Rapid Technologies which offers high quality low priced rapid diagnostic tests and supporting devices for monitoring human and animal health. O...

Last active:Saturday 05 May 2012 20:33:09 (UTC)

Website:http://www.lifesparks.co.za | Email (public):suza.adam [at] gmail.com

Field/Industry:Life Sciences | Biotechnology | Occupation/Role(s):Business entrepreneur

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User Wassinki

Joined: Monday 25 February 2008 13:11:39 (UTC)

I have received my master's degree in 2005 in computer science. During my masters, I did research on artificial intelligence, multi-agent systems and driving simulation. Currently, I am a Ph.D.student within the Bsik project  BioRange at the Human Media Interaction Group at the University of Twente, the Netherlands. My current research is on computer visualisation techniques for life scien...

Last active:Wednesday 29 July 2009 07:05:10 (UTC)

Website:http://hmi.ewi.utwente.nl/tkisis/persoon/Ingo%20Wassink | Email (public):wassinki [at] ewi.utwente.nl

Field/Industry:HCI/Workflow | Occupation/Role(s):PhD student

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User Wibisono

Joined: Wednesday 23 January 2008 14:54:24 (UTC)

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User Willem van Hage

Joined: Monday 10 December 2007 22:00:16 (UTC)

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User Yassene

Joined: Tuesday 14 June 2011 16:42:50 (UTC)

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User Yuwei Lin

Joined: Monday 15 October 2007 16:03:03 (UTC)

I am a sociologist whose main interest is studying socio-technical dynamics in ICT development and adoption processes.

Last active:Monday 14 December 2009 17:57:35 (UTC)

Website:http://www.ylin.org

Occupation/Role(s):Social Scientist

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