User: Jumblejumble

Name: Jumblejumble

Joined: Monday 16 March 2009 @ 14:15:39 (GMT)

Last seen: Friday 20 March 2009 @ 11:18:15 (GMT)

Email (public): j.d.bell1 [at] ncl.ac.uk

Website: Not specified

Location: Newcastle Upon Tyne, United Kingdom

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Other contact details:

Not specified

Interests:

Neuroinformatics and Biogerontology.

Field/Industry: Informatics

Occupation/Role(s): Masters Student

Organisation(s):

The University of Newcastle Upon Tyne

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Workflow

Taverna 1

Original Uploader

Jumblej...

fetch_fasta (v1)

Created: 20/03/09 @ 11:22:45 | Last updated: 20/03/09 @ 11:29:16

Credits: Jumblejumble

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This work flow is designed to take an EMBL file containing the genomic data for an identified bacterium. From this information the workflow can determine whether or not that this strain is an MRSA type of bug. This can be determined based on the MecA profile of the given strain. Blast is utilised to find a relationship with given proteins and that of know S. aureus strains. This phylogenic output is generated from a ClustalW algorithm that plots a phylogenic tree. The output is prese...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 1 | Citations: 0

Viewed: 160 times | Downloaded: 73 times

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