Gb User: James Eales

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Name: James Eales

Joined: Wednesday 21 November 2007 08:48:01 (UTC)

Last seen: Thursday 23 May 2013 07:08:40 (UTC)

Email (public): james.eales [at] manchester.ac.uk

Website: http://www.bioinf.manchester.ac.uk/robertson/jeales/

Location: Manchester, United Kingdom

James Eales has been credited 23 times

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Blob kidney factomics nominalised triples in RDF

Created: 2011-07-14 22:04:54

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 The extracted triples (after nominalising the predicate) in RDFXML

File type: RDF data

Comments: 0 | Viewed: 29 times | Downloaded: 16 times

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Blob kidney factomics triples in RDF

Created: 2011-07-14 21:58:57

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 The KUP triples in RDF XML

File type: RDF data

Comments: 0 | Viewed: 22 times | Downloaded: 17 times

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Blob list of biologically-themed journals

Created: 2011-06-30 00:56:28 | Last updated: 2011-06-30 00:56:50

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is a text file listing biological journals

File type: Plain text

Comments: 0 | Viewed: 17 times | Downloaded: 15 times

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Blob Description of RapidMiner plugin video part 2

Created: 2011-06-06 11:56:45 | Last updated: 2011-06-06 11:57:42

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Simple text file listing the steps in part 2 of the video

File type: Plain text

Comments: 0 | Viewed: 52 times | Downloaded: 31 times

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Blob Description of RapidMiner plugin video part 1

Created: 2011-06-06 11:55:39 | Last updated: 2011-06-06 11:56:18

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Simple text file listing the steps in part 1 of the video

File type: Plain text

Comments: 0 | Viewed: 80 times | Downloaded: 51 times

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Blob attribute descriptions for article title training data

Created: 2011-05-20 23:04:48

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This PDF contains details of each attribute used in the article title classification.

File type: Adobe PDF

Comments: 0 | Viewed: 20 times | Downloaded: 18 times

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Blob KUP titles cytoscape triple graph

Created: 2011-05-20 22:49:34 | Last updated: 2011-05-20 22:50:45

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is a cytoscape .cys file that contains the graph discussed in the paper. "An exercise in kidney factomics: From article titles to RDF knowledge base".

File type: Trident (Package)

Comments: 0 | Viewed: 19 times | Downloaded: 17 times

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Blob KUP titles triple graph

Created: 2011-04-22 04:50:45 | Last updated: 2011-05-20 16:04:57

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Largest connected component of RDF graph, visualised in Cytoscape, graph laid out using organic layout. Nodes represent unique subjects or objects and are sized by their number of edge connections

File type: Adobe PDF

Comments: 0 | Viewed: 27 times | Downloaded: 35 times

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Blob attribute list for article title training data

Created: 2011-04-21 15:40:43

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is an html table listing the attributes derived from each title sentence

File type: htm

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Blob Training data for article title classification

Created: 2011-04-21 15:23:53 | Last updated: 2011-04-21 15:24:46

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is the training data used for article title classification

File type: Trident (Package)

Comments: 0 | Viewed: 28 times | Downloaded: 19 times

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Workflow

Workflow Classification of GEO assays using RapidAn... (2)

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Created: 2011-05-04 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow Agglomerative clustering of a GEO dataset ... (2)

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Created: 2011-04-28 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow Distance heatmap of GEO dataset produced b... (2)

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Created: 2011-04-28 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow One sentence per line (1)

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This workflow accepts a plain text input and provides a single text document per input containing one sentence per line.  Newline characters are removed from the original input. The OpenNLP sentence splitter is used to split the text, this is provided by University of Manchester Web Services.

Created: 2011-05-06 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow Terms from collection of PDF files (2)

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This workflow will give you a set of candidate terms for each PDF document in a user-specified directory. You can also specify a c-value threshold that will restrict the terms to those with higher scores. This workflow was created using only nested workflows.  These workflow components work on their own and can be linked together to form more complex workflows such as this. You can view the text mining workflow components in this pack. If you receive errors when running this workflow t...

Created: 2010-02-19 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow Terms from collection of text files (1)

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This workflow will give you a set of candidate terms for each text file in a user-specified directory. You can also specify a c-value threshold that will restrict the terms to those with higher scores. This workflow was created using only nested workflows.  These workflow components work on their own and can be linked together to form more complex workflows such as this. You can view the text mining workflow components in this pack. If you receive errors when running this workflow then...

Created: 2010-02-22 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow Load plain text from directory (1)

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This workflow will automate the reading of a set of text files stored in a single directory (the path to which should be supplied as a single input value).  It will assume that the text files are saved using the default character encoding for the system that Taverna is running on.  This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow.  

Created: 2010-02-18 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow Load PDF from directory (1)

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This workflow will automate the reading of a set of PDF files stored in a single directory (the path to which should be supplied as a single input value). This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow.  

Created: 2010-02-19 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow Clean plain text (1)

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This workflow will remove any XML-invalid characters (these characters often appear in the output of PDF to text software) from any text supplied to the input port. This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow.  

Created: 2010-02-18 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow Clean plain text (ASCII) (1)

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This workflow will remove any XML-invalid and non-ASCII characters (e.g. for sending to the ASCII-only Termine service) from any text supplied to the input port. This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow.

Created: 2010-02-18 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow PDF to plain text (1)

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This workflow will extract the plain text content of PDF files supplied to the input port.  You can connect the Load PDF from directory workflow to this workflows input. We recommend you send the output from this workflow to the Clean plain text workflow, because the PDF to text process can add characters into the text that are XML-invalid and therefore can not be sent to most services as plain text.  Another way round this problem is to encode the text as Base64 using the handy loc...

Created: 2010-02-19 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow Termine with c-value threshold (1)

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This workflow accepts a list of sentences from a single document and returns the terms found by the TerMine web service. It also allows you to set a threshold c-value score so that only terms with a user-controlled probability (of being a real term) are returned as an output.   To get sentences to supply to this workflow you can use the sentence splitting workflow.  The TerMine service (used in this workflow) only accepts text in ASCII encoding, so you should also use the Clean p...

Created: 2010-02-19 | Last updated: 2011-12-13

Credits: User James Eales

Workflow

Workflow Sentence splitting (1)

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This workflow will attempt to split up text into sentences, returning a list of sentences to the output port.  The sentence splitting service makes use of the OpenNLP sentence detector and has been trained to work on english text. This workflow can be used to provide input to the Termine with c-value threshold workflow. This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow.

Created: 2010-02-19 | Last updated: 2011-12-13

Credits: User James Eales

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