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Paul Fisher

User: Paul Fisher

Name: Paul Fisher

Joined: Thursday 26 July 2007 @ 16:46:52 (BST)

Last seen: Tuesday 10 August 2010 @ 12:53:17 (BST)

Email (public): paul.fisher [at] manchester.ac.uk

Website: http://www.cs.man.ac.uk/~fisherp/

Location: Manchester, United Kingdom

52 Friends

9 Groups (admin)

9 Groups (member)

1 Blogs

6 Packs

34 Files

123 Workflows

2 Favourites

Paul Fisher has been credited 229 times

Paul Fisher has an average rating of:

4.5 / 5

(17 ratings in total)

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I am currently working under a BBSRC SABR grant for the Univeristy of Manchester. My current research is directed towards the development of novel bioinformatics workflows to aid in the reconstruction of the Yeast Metabolome, using Ondex and Taverna.

My PhD research focused on using QTL and microarray data, looking at the level of biological pathway, to identify novel links between Genotype and Phenotype. I am conducting these correlations thorugh the use of web services and workflows. These have been tested on African Trypanosomiasis in both Cattle and mice, Lung Cancer, infection of a mouse with Trichuris muris, and Colitis / Inflammatory bowel disease.

Other contact details:

Not specified

Interests:

Workflows
QTL analysis
Microarrays
Biological pathway analysis
In silico automation
Epilepsy
Alzheimers
Genome Sequencing
Disease gene identification

Field/Industry: Bioinformatics

Occupation/Role(s): Post Doctoral Research Associate

Organisation(s):

University of Manchester

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Workflow

Pipeline Pilot

Original Uploader

Paul Dobson

Wash and filter molecules (v1)

Created: 20/01/09 @ 10:11:25

Credits: Paul Dobson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The Wash and Filter workflow performs some processing on incoming structures to filter out those wildcards or unspecified atom types, standardise stereo and charges, and various other adjustments. This is an advance on the filter used in the paper... Drug Discovery Today Volume 14, Issues 1-2, January 2009, Pages 31-40 ‘Metabolite-likeness’ as a criterion in the design and selection of pharmaceutical drug libraries

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

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Workflow

Taverna 1

Original Uploader

Marco Roos

BioAID_DiseaseDiscovery (v3)

Created: 15/12/08 @ 20:46:09 | Last updated: 15/12/08 @ 20:47:50

Credits: Marco Roos AID

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow finds disease relevant to the query string via the following steps: 1. A user query: a list of terms or boolean query - look at the Apache Lucene project for all details. E.g.: (EZH2 OR "Enhancer of Zeste" +(mutation chromatin) -clinical); consider adding 'ProteinSynonymsToQuery' in front of the input if your query is a protein. 2. Retrieve documents: finds 'maximumNumberOfHits' relevant documents (abstract+title) based on query (the AIDA service inside is based on Apa...

Rating: 4.0 / 5 (2 ratings) | Versions: 3 | Reviews: 0 | Comments: 2 | Citations: 0

Viewed: 2385 times | Downloaded: 322 times

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