User: Paul Fisher

Name: Paul Fisher

Joined: Thursday 26 July 2007 @ 16:46:52 (GMT)

Last seen: Friday 11 May 2012 @ 14:17:47 (GMT)

Email (public): Not specified

Website: http://twitter.com/#!/paul_r_fisher

Location: Manchester, United Kingdom

53 Friends

9 Groups (admin)

10 Groups (member)

145 Workflows

8 Packs

48 Files

2 Favourites

Paul Fisher has been credited 267 times

Paul Fisher has an average rating of:

4.6 / 5

(25 ratings in total)

for their items

I am currently employed by Astrazeneca. As a consequence, the workflows developed previously to this employment (before 5th September 2011) may no longer be supported.

Other contact details:

Not specified

Interests:

Workflows
QTL analysis
Microarrays
Biological pathway analysis
In silico automation
Epilepsy
Alzheimers
Genome Sequencing
Disease gene identification

Field/Industry: Bioinformatics

Occupation/Role(s): Bioinformatics Scientist - Oncology

Organisation(s):

Not specified

Note: some items may not be visible to you, due to viewing permissions.

Uploader: Paul Fisher	Ondex Workflows Created: 01/09/11 @ 17:17:57 \| Last updated: 01/09/11 @ 17:18:05 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This zip file contains a large number of Taverna 2 workflows that utilise the Ondex Web Service, for manipulating Ondex graphs. File type: ZIP archive Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 7 times \| Downloaded: 0 times Tags: annotation \| compound \| enzyme \| gene identifier \| general data store \| graph \| ismb \| ondex \| ovtk \| oxl \| parser \| pubmed \| text \| text mining; term extraction; entity recognition	View
Uploader: Paul Fisher	Human Gene expression data - Created: 01/04/11 @ 09:12:28 \| Last updated: 01/04/11 @ 09:12:40 Credits: Saeedeh Attributions: License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list processed for Human gene expression CEL files relating to the: Impact of NRSF variant over-expression in SK-N-AS human neuroblastoma cells (http://www.ebi.ac.uk/arrayexpress/browse.html?keywords=E-GEOD-22467&expandefo=on). The CEL files were analysed using the MADAT Taverna workflow available on myExperiment: http://www.myexperiment.org/workflows/2002.html File type: ZIP archive Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 7 times \| Downloaded: 5 times Tags: affmetrix \| affymetrix \| gene expression \| gene identifier \| homo sapiens \| human \| kegg \| Kegg Pathways \| madat \| pathway \| pathway-driven \| pathways \| r	View Download
Uploader: Paul Fisher	Human Probeset data from Affymetrix Created: 01/04/11 @ 09:08:45 \| Last updated: 01/04/11 @ 09:08:51 License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list or affymetrix probest identifiers for Human gene expression data relating to the: Impact of NRSF variant over-expression in SK-N-AS human neuroblastoma cells (http://www.ebi.ac.uk/arrayexpress/browse.html?keywords=E-GEOD-22467&expandefo=on) File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 6 times \| Downloaded: 5 times Tags: affymetrix \| arrayexpress \| expression \| gene \| gene expression \| madat \| probeset	View Download
Uploader: Paul Fisher	Taverna XPath practical slides . Created: 30/03/11 @ 09:17:52 \| Last updated: 30/03/11 @ 09:17:55 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License Taverna training material for using and configuring XPath queries using native XPath Java methods, and XPath Service templates. File type: PowerPoint presentation Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 9 times \| Downloaded: 12 times Tags: training \| xml \| xpath	View Download
Uploader: Paul Fisher	Taverna Iteration training slides Created: 28/03/11 @ 11:44:06 \| Last updated: 28/03/11 @ 11:44:08 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License Training slides to outline how to use iterations and iteration strategies in Taverna File type: PowerPoint presentation Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 19 times \| Downloaded: 23 times Tags: iteration \| training	View Download
Uploader: Paul Fisher	Bonn Taverna Training agenda March/April 2011 Created: 28/03/11 @ 11:31:38 \| Last updated: 28/03/11 @ 11:31:39 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License Agenda of Taverna training File type: Word document Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 12 times \| Downloaded: 16 times Tags: agenda \| training	View Download
Uploader: Paul Fisher	Taverna Introduction Created: 28/03/11 @ 11:29:08 \| Last updated: 28/03/11 @ 11:29:10 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This powerpoint presentation contains a set of starting exercises for begining your Taverna training. File type: PowerPoint presentation Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 32 times \| Downloaded: 54 times Tags: training	View Download
Uploader: Paul Fisher	Example XML Created: 23/03/11 @ 17:25:09 \| Last updated: 23/03/11 @ 17:25:11 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains some example XML to be used for teaching material and XPath queries File type: XML Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 11 times \| Downloaded: 10 times Tags: xml \| xpath	View Download
Uploader: Paul Fisher	Schema for flat file cross-referencing Created: 23/03/11 @ 17:00:58 \| Last updated: 23/03/11 @ 17:01:01 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This powerpoint slide shows the how data in each flat file can be cross-reference to other flat file data items. File type: PowerPoint presentation Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 9 times \| Downloaded: 4 times Tags: bilateral perisylvian polymicrogyria \| epilepsy \| schema	View Download
Uploader: Paul Fisher	XML Result from Pubmed Search Created: 23/03/11 @ 11:49:33 \| Last updated: 23/03/11 @ 11:49:36 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This xml file conatins results from a pubmed search for 'Blood Clotting'. File type: XML Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 9 times \| Downloaded: 11 times Tags: blood clotting \| xml \| xpath	View Download
Uploader: Paul Fisher	Bilateral Perisylvian Polymicrogyria - Single Nucleotide Polymorphisms Created: 17/03/11 @ 11:21:06 \| Last updated: 17/03/11 @ 11:21:12 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list of all the SNP found with the Villard et al., (2002) QTL for Bilateral Perisylvian Polymicrogyria. Please download this data as you wish, and use in whatever study you like. The data is open access, and freely available for all to use to help undertand this condition. Genes related to these SNP can be found in the file http://www.myexperiment.org/files/466. File type: ZIP archive Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 10 times \| Downloaded: 6 times Tags: bilateral perisylvian polymicrogyria \| epilepsy \| nucleotide \| polymorphism \| snp \| snps	View Download
Uploader: Paul Fisher	Bilateral Perisylvian Polymicrogyria Created: 17/03/11 @ 10:56:15 \| Last updated: 17/03/11 @ 11:16:53 Credits: Paul Fisher Attributions: Pathway and Gene to Pubmed Pathways and Gene annotations forQTL region License: Creative Commons Attribution-Share Alike 3.0 Unported License This zip file contains the results of running a QTL workflow for Bilateral Perisylvian Polymicrogyria in human (homo sapiens). Provided are a list of candidate QTL genes (QTg) and their corresponding KEGG pathways. Each gene and pathway have been subsequently run through a series of text mining workflows to determine the significance each may play in relation to Bilateral Perisylvian Polymicrogyria. If you want to help me identify candidate genes for this disorder, please get i... File type: ZIP archive Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 12 times \| Downloaded: 7 times Tags: bilateral perisylvian polymicrogyria \| cosine vector space \| data integration \| data-driven \| enrichment \| entity recognition \| epilepsy \| gene \| homo sapiens \| human \| Kegg Pathways \| pathways \| phenotype \| pubmed \| qtl \| quanitative \| region \| text mining \| text mining; term extraction; entity recognition	View Download
Uploader: Paul Fisher	Trichuriasis Induced Colitis Created: 16/02/11 @ 15:16:17 \| Last updated: 16/02/11 @ 15:16:24 Credits: Paul Fisher Attributions: Pathways and Gene annotations for RefSeq ids KEGG pathways common to both QTL and microarray based investigations Pathways and Gene annotations for QTL region Pathway and Gene to Pubmed License: Creative Commons Attribution-Share Alike 3.0 Unported License This zip file contains the results of workflow runs for: identifying genes in each of the 7 QTL regions for Trichuris muris infection; identifying genes differentially expressed in mice challenged with Trichuris muris; and Text mining results (including cosine vector scores and Term Enrichment values). File type: Trident (Package) Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 8 times \| Downloaded: 6 times Tags: gene expression \| genotype \| Kegg Pathways \| microarray \| pathway-driven \| phenotype \| pubmed \| qtl \| trait \| trichuris muris	View Download
Uploader: Paul Fisher	Bilateral Perisylvian Polymicrogyria (Epilepsy) Created: 07/12/10 @ 16:34:31 \| Last updated: 07/12/10 @ 16:34:37 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This zip file contains the results of running a QTL workflow for Bilateral Perisylvian Polymicrogyria in human (homo sapiens). Provided are a list of candidate QTL genes (QTg) and their corresponding KEGG pathways. Each gene and pathway have been subsequently run through a series of text mining workflows to determine the significance of each may play in relation to Bilateral Perisylvian Polymicrogyria AND/OR Epilepsy. Further to this, I have also collected the SNPs (single nucleotide... File type: application/x-zip-compressed Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 12 times \| Downloaded: 0 times Tags: bilateral perisylvian polymicrogyria \| cosine vector space \| data-driven \| epilepsy \| gene identifier \| geneid \| genotype \| homo sapiens \| human \| literature \| pathway \| pathway-driven \| pathways \| phenotype \| pubmed \| re-use \| region \| snp \| snps \| text \| text mining \| text mining; term extraction; entity recognition	View
Uploader: Paul Fisher	KEGG Compounds to Inchi strings Created: 02/11/09 @ 16:15:39 \| Last updated: 02/11/09 @ 16:15:57 Credits: Paul Fisher Paul Dobson License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list of KEGG compounds which are reffered to by their Inchi strings. File type: Chemistry Plan Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 13 times \| Downloaded: 29 times Tags: inchi \| kegg compounds	View Download
Uploader: Paul Fisher	Ondex and Taverna Tutorial Created: 22/10/09 @ 13:50:53 \| Last updated: 22/10/09 @ 13:51:51 Credits: George License: Creative Commons Attribution-Share Alike 3.0 Unported License Biological Data Integration Using Ondex and Taverna: A Tutorial 25/26th November 2009 The University of Manchester The Ondex SABR project (http://ondex.org/sabr.html) invite you to a two-day tutorial that aims to show participants how to use Ondex and Taverna to perform common biological data collection, integration and visualisation tasks. File type: Word document Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 30 times \| Downloaded: 24 times Tags: annotation \| concept \| data integration \| esearch \| eutils \| filter \| gds \| general data store \| genes \| getconcepts \| graph \| inchi \| ismb \| merge \| ondex \| ovtk \| oxl \| pubmed \| relation nieghbour \| relation type \| sub-graph \| swissprot \| terms \| text \| text mining \| unconnected \| uniprot \| workflow	View Download
Uploader: Paul Fisher	Pathway Term Enrichment Scores Created: 11/08/09 @ 14:23:49 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list of each pathway identified from day 7 post infection and linked to the Tir1 QTL. With each pathway is a list of terms that are common to both pathway and phenotype corpora. These terms were ranked accoring to their enrichement scores. The higher the score, the more significant the term is in relation to correlating the pathway with the African trypanosomiasis resistance phenotype. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 49 times \| Downloaded: 0 times Tags: abstracts \| african trypanosomiasis \| authors \| concept profile \| cosine vector space \| data-driven \| enrichment \| pubmed \| sleeping sickness \| term \| term extraction \| terms \| text \| text mining \| text mining; term extraction; entity recognition	View
Uploader: Paul Fisher	Pathway Abstracts for Day7 Microarray Tir1 QTL Created: 11/08/09 @ 14:08:41 \| Last updated: 11/08/09 @ 14:15:58 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains all the abstracts for pathways found to be differentially expressed at day 7 post infection and intersect the Tir1 QTL region, from the African Trypanosomiasis project. Each pathway is listed as ">> [Pathway Name]", together with a PubMed identifier, date, and abstract for each article. Each pathway has been restricted to 500 abstracts, and is given in the date range 31/12/2007 to 01/01/2009. Note, some pathways do not have any abstracts available due to th... File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 16 times \| Downloaded: 0 times Tags: abstracts \| african trypanosomiasis \| authors \| cosine vector space \| data-driven \| enrichment \| esearch \| eutils \| genotype \| kegg \| Kegg Pathways \| pathway \| pathway-driven \| pathways \| phenotype \| pubmed \| term \| term extraction \| terms \| text \| text mining \| text mining; term extraction; entity recognition	View
Uploader: Paul Fisher	PubMed Term Counts Created: 11/08/09 @ 13:59:35 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a count of each phenotype term extracted from corpus of phenotype abstracts. Each value represents the number of articles in MEDLINE the term appears. The use of this file is to calculate a cosine vector score for correlating a given concept (e.g. pathway or gene) with a phenotype. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 29 times \| Downloaded: 0 times Tags: abstracts \| african trypanosomiasis \| concept \| cosine vector space \| pubmed \| sleeping sickness \| term \| term extraction \| terms	View
Uploader: Paul Fisher	PubMed Abstract Number Created: 11/08/09 @ 13:54:45 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains the number of articles available in MEDLINE, through PubMed, at the time of performing these data analyses. The date of identifying these publications was 25/02/2009. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 21 times \| Downloaded: 0 times Tags: abstracts \| african trypanosomiasis \| pubmed \| sleeping sickness \| text mining \| text mining; term extraction; entity recognition	View
Uploader: Paul Fisher	Phenotype Term Counts (in Phenotype Corpus) Created: 11/08/09 @ 13:34:42 \| Last updated: 11/08/09 @ 13:58:28 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a count of each phenotype term extracted from corpus of phenotype abstracts. Each value represents the number of articles in the phenotype corpus the term appears. The use of this file is to calculate a cosine vector score for correlating a given concept (e.g. pathway or gene) with a phenotype. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 16 times \| Downloaded: 0 times Tags: abstracts \| african trypanosomiasis \| append term \| authors \| phenotype \| pubmed \| ranking \| sleeping sickness \| term \| term extraction \| terms \| text \| text mining \| text mining; term extraction; entity recognition	View
Uploader: Paul Fisher	Phenotype Concept Profile - Terms Created: 11/08/09 @ 13:05:07 \| Last updated: 11/08/09 @ 13:06:51 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list of all terms extracted from the phenotype corpus, relating to African trypanosomiasis resistance in the mouse model. These terms were extracted using the following service: http://gopubmed4.biotec.tu-dresden.de/GoPubMedTermGenerationService/services/GoPubMedTermGeneration?wsdl These terms represent the concept profile for the phenotype. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 18 times \| Downloaded: 0 times Tags: abstracts \| african trypanosomiasis \| authors \| concept profile \| cosine vector space \| dresden \| enrichment \| entity recognition \| gene \| mining \| mouse \| protein \| pubmed \| sleeping sickness \| term \| term extraction \| terms \| text \| text mining \| text mining; term extraction; entity recognition	View
Uploader: Paul Fisher	Phenotype Abstracts for Trypanosomiasis Resistance Created: 11/08/09 @ 12:45:24 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list of published abstracts from MEDLINE, that are related to the African Trypanosomiasis resistance phentoype in the mouse. The term used in the PubMed search was: trypanosom* AND (tolerance OR resistance) . The workflow limited the date of the search using PubMed between 31/12/2005 to 01/01/2009, and was restricted to 500 abstracts. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 7 times \| Downloaded: 0 times Tags: abstracts \| african trypanosomiasis \| cosine vector space \| information \| mining \| pubmed \| sleeping sickness \| term \| term extraction \| terms \| text \| text mining \| text mining; term extraction; entity recognition	View
Uploader: Paul Fisher	Gene Cosine Scores Created: 10/08/09 @ 16:00:45 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This excel file contains a list of genes linked to the resistance to African trypanosomiasis in the mouse. Genes from the Tir1 QTL were used in a search through PubMed. The results were then correlated to the trypanosomiasis resistance phenotype. The higher the score (and ranking) the more related to the phenotype the gene is likely to be. This is based on the co-occurrence of terms within the gene and phentoype corpora. File type: Excel workbook Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 14 times \| Downloaded: 0 times Tags: abstracts \| african trypanosomiasis \| authors \| cosine vector space \| data-driven \| enrichment \| entity recognition \| gene \| geneid \| genes \| mouse \| ncbi \| phenotype \| pubmed \| ranking \| sleeping sickness \| term \| term extraction \| terms \| text \| text mining \| text mining; term extraction; entity recognition	View
Uploader: Paul Fisher	Pathway Cosine Scores from Day7 and Tir1 QTL Created: 10/08/09 @ 15:55:24 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This excel file contains a list of all pathways found to be differentially expressed at day 7 post infection in the trypanosomiasis resistance phenotype, which contain genes in the Tir1 QTL. The pathways in this file have been ranked according to the scores obtained after calculating a cosine vector value against the trypanosomiasis resistance phenotype. The higher the score, the more closely linked to a phentype a given pathway is. This allows each pathway to be ranked giving biologists a ... File type: Excel workbook Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 14 times \| Downloaded: 0 times Tags: abstracts \| african trypanosomiasis \| cosine vector space \| data-driven \| kegg \| Kegg Pathways \| pathway \| pathway-driven \| pathways \| phenotype \| sleeping sickness \| term \| term extraction \| terms \| text \| text mining \| text mining; term extraction; entity recognition \| trait	View
Uploader: Paul Fisher	Ensembl gene report Created: 08/04/09 @ 19:30:15 \| Last updated: 10/08/09 @ 11:05:59 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains all genes identified in the Tir1 QTL region. Each gene is (if available) associated with an Entrez, UniProt, External Gene Id, Affymetrix probeset identifers (mouse_430_A chip), and Ensembl identifers for genes and their transcripts. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 41 times \| Downloaded: 29 times Tags: affymetrix \| base pair \| chromosome \| ensembl \| entrez \| gene \| uniprot	View Download
Uploader: Paul Fisher	Kegg pathway identifiers Created: 08/04/09 @ 19:28:52 \| Last updated: 10/08/09 @ 11:03:00 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list of KEGG pathway identifiers, derived from a list of Ensembl genes found to be located with a given QTL/chromosomal region in the mouse. These genes are located in the Tir1 QTL. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 26 times \| Downloaded: 26 times Tags: kegg \| Kegg Pathways \| KeggID	View Download
Uploader: Paul Fisher	Kegg pathway descriptions Created: 08/04/09 @ 19:27:55 \| Last updated: 10/08/09 @ 11:29:34 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list of KEGG pathway descriptions, identified from genes found within the Tir1 QTL region (for African Trypanosomiasis). Each pathway may contain multiple genes from within the QTL region. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 18 times \| Downloaded: 18 times Tags: kegg \| Kegg Pathways \| KeggID	View Download
Uploader: Paul Fisher	Kegg pathways and genes Created: 08/04/09 @ 19:26:26 \| Last updated: 10/08/09 @ 11:41:55 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list of all genes found within the Tir1 QTL region. These are represented as KEGG gene identifiers. Each gene is listed in tab deliminated format along with all KEGG pathway ids in which the gene is involved. These are given as KEGG pathway identifiers. Each gene may be included in zero or more pathways, with multiple instances of the same pathway being included in the file (due to multiple genes included in a single pathway). File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 22 times \| Downloaded: 22 times Tags: Kegg Pathways \| KeggID \| pathway \| pathway-driven \| pathways	View Download
Uploader: Paul Fisher	Kegg Pathway release Created: 08/04/09 @ 19:25:05 \| Last updated: 10/08/09 @ 12:06:18 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains the version of the KEGG pathway database used in the analysis of the Tir1 QTL region File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 16 times \| Downloaded: 17 times Tags: database \| kegg \| Kegg Pathways	View Download
Uploader: Paul Fisher	Kegg-Uniprot-Entrez cross-references Created: 08/04/09 @ 19:23:53 \| Last updated: 10/08/09 @ 12:08:00 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list of KEGG gene identifiers, cross-referenced to UniProt and Entrez identifiers. The UniProt and Entrez ids were obtained from BioMart for genes located in the Tir1 QTL region. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 37 times \| Downloaded: 54 times Tags: entrez \| kegg \| KeggID \| uniprot	View Download
Uploader: Paul Fisher	Kegg gene descriptions Created: 08/04/09 @ 18:06:23 \| Last updated: 10/08/09 @ 12:10:07 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains a list of KEGG gene descriptions, for each KEGG gene identified within the Tir1 QTL region. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 26 times \| Downloaded: 24 times Tags: gene \| kegg \| KeggID \| mouse	View Download
Uploader: Paul Fisher	Ensembl database release Created: 08/04/09 @ 18:00:35 \| Last updated: 10/08/09 @ 12:12:09 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License The release of the Ensembl database used to identify genes in Tir1 QTL region. File type: Plain text Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 18 times \| Downloaded: 13 times Tags: ensembl \| gene \| geneid \| qtl	View Download
Uploader: Paul Fisher	Tir1 QTL - microarray day 7 intersecting pathways Created: 08/04/09 @ 17:57:57 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This spreadhseet contains all of the intersecting pathways between the Tir1 QTL and day 7 differentially expressed genes File type: Excel workbook Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 24 times \| Downloaded: 24 times Tags: affymetrix \| african trypanosomiasis \| gene \| microarray \| pathway \| qtl \| sleeping sickness	View Download
Uploader: Paul Fisher	Tir1 QTL - Day 3 Microarray intersecting pathways Created: 08/04/09 @ 17:56:10 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This spreadhseet contains all of the intersecting pathways between the Tir1 QTL and day 3 differentially expressed genes File type: Excel workbook Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 20 times \| Downloaded: 21 times Tags: african trypanosomiasis \| expression \| gene \| microarray \| qtl \| sleeping sickness	View Download
Uploader: Paul Fisher	Re-sequenced Daxx gene info Created: 08/04/09 @ 17:53:46 \| Last updated: 10/08/09 @ 12:30:59 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This spreadsheet contains information about the re-sequencing of the daxx gene, identified as a candidate QTg for the African Trypanosomiasis resiatance phenotype. This file is related to the paper: http://www.ncbi.nlm.nih.gov/pubmed/17709344 File type: Excel workbook Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 29 times \| Downloaded: 21 times Tags: deletion \| gene \| mutation \| sequence \| snp	View Download
Uploader: Paul Fisher	Authors table Created: 08/04/09 @ 13:36:10 \| Last updated: 10/08/09 @ 12:37:37 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This table contains a list of articles used to construct a list of issues with regards to the lack of systematic and explicit data analyses conducted in bioinformatcis. Each author list is linked directly to their publication within PubMed. File type: Excel workbook Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 10 times \| Downloaded: 7 times Tags: authors	View Download
Uploader: Paul Fisher	Table of SNP sequenceing results Created: 08/04/09 @ 13:29:32 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This file contains the results of re-sequencing the Daxx gene File type: Word document Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 350 times \| Downloaded: 24 times Tags: african trypanosomiasis \| daxx \| genotype \| mouse \| phenotype \| sleeping sickness \| snp \| snps	View Download
Uploader: Paul Fisher	Candidate Gene protocol Created: 08/04/09 @ 13:27:20 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This protocol provides details on how to identify candidate genes from the returned workflow results. File type: Word document Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 37 times \| Downloaded: 39 times Tags: affymetrix \| african trypanosomiasis \| gene \| gene identifier \| geneid \| Kegg Pathways \| KeggID \| pathway \| pathway-driven \| pathways \| phenotype \| sleeping sickness	View Download
Uploader: Paul Fisher	A Systematic Strategy for Large-Scale Analysis of Genotype-Phenotype Correlations: Identification of candidate genes involved in African Trypanosomiasis Created: 08/04/09 @ 13:23:03 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This PDF is my personal copy of the NAR publication. File type: Adobe PDF Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 31 times \| Downloaded: 30 times Tags: african trypanosomiasis \| genotype \| pathway-driven \| phenotype \| sleeping sickness	View Download
Uploader: Paul Fisher	An Introduction to Taverna and myExperiment - Background Created: 04/08/08 @ 17:49:10 Credits: Paul Fisher Franck Tanoh Katy Wolstencroft License: Creative Commons Attribution-Share Alike 3.0 Unported License No description File type: PowerPoint presentation Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 81 times \| Downloaded: 143 times Tags: neuroscience \| newcastle \| web services \| workflows	View Download
Uploader: Paul Fisher	A Taverna Users Guide Created: 04/08/08 @ 17:40:21 Credits: Paul Fisher Katy Wolstencroft Franck Tanoh License: Creative Commons Attribution-Share Alike 3.0 Unported License No description File type: PowerPoint presentation Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 90 times \| Downloaded: 109 times Tags: bioinformatics \| microarray \| mining \| neuroscience \| newcastle \| sleeping sickness \| summary \| web services	View Download