Gb User: Paolo

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Name: Paolo

Joined: Wednesday 30 January 2008 @ 15:25:36 (GMT)

Last seen: Tuesday 15 May 2012 @ 17:24:34 (GMT)

Email (public): pmissier [at] cs.man.ac.uk

Website: http://www.cs.man.ac.uk/~pmissier/

Location: Manchester, United Kingdom

Paolo has been credited 23 times

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Data and metadata management, data and information quality

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Occupation/Role(s): Not specified

Organisation(s):

University of Manchester, School of Computer Science

 

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Blob input to eSC-T-1 workflow

Created: 25/02/11 @ 09:00:00 | Last updated: 25/02/11 @ 09:00:01

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob The Janus provenance ontology

Created: 08/07/10 @ 18:35:49 | Last updated: 08/07/10 @ 18:35:50

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: Trident (Package)

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Blob OPM graph in RDF format for PC1_B workflow with sameAs statements

Created: 25/06/10 @ 01:10:59

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

this version of the OPM graph includes URLs to each of the data files, which have been uploaded to an ftp server so they can be shared.

File type: RDF data

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Blob OPM graph in RDF format for PC1_B workflow (mockup)

Created: 21/06/10 @ 16:18:25 | Last updated: 21/06/10 @ 16:18:26

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: RDF data

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Blob OPM graph in RDF format for PC1_A workflow (mockup)

Created: 21/06/10 @ 16:16:53 | Last updated: 21/06/10 @ 16:16:54

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: RDF data

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Blob OPM provenance graph for one run of the workflow

Created: 21/06/10 @ 16:15:21

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: RDF data

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Blob OPM graph in XML format for PC1_B workflow (mockup)

Created: 21/06/10 @ 09:50:57

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob OPM graph in XML format for PC1_A workflow (mockup)

Created: 21/06/10 @ 09:45:21 | Last updated: 21/06/10 @ 09:45:22

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob Janus provenance graph (RDF)

Created: 08/06/10 @ 23:02:53 | Last updated: 09/06/10 @ 22:48:46

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

RDF instance file containing the entire provenance graph for once run of the PC1 mockup workflow. The RDF graph complies with the Janus ontology, which can be viewed here Caveat: implementation still under testing, file may still contain bugs  

File type: RDF data

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Blob test inputs for mockup version of PC1 workflow

Created: 28/05/10 @ 07:24:31 | Last updated: 28/05/10 @ 07:25:55

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob EDBT Provenance talk presentation - PFD version

Created: 26/03/10 @ 14:01:00 | Last updated: 26/03/10 @ 14:02:09

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

PDF version -- see related pack for Native Keynote link to paper link to conference proceedings  

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Blob GeoClouds workshop talk

Created: 18/09/09 @ 13:58:14

Credits: User Paolo User David De Roure User Carole Goble User David R Newman

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Indianapolis, IN, Sept 17, 2009 www.dataandsearch.org/dsi/events/geoclouds.html

File type: application/x-zip

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Blob Provenance DB dump to be used as a reference

Created: 10/09/09 @ 14:18:23

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

this dump contains the provenance for 2 runs of this workflow: www.myexperiment.org/workflows/908

File type: Chemistry Plan

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Workflow

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Workflow Provenance Challenge 1 workflow part B -- mockup version (v1)

Created: 21/06/10 @ 09:48:42 | Last updated: 21/06/10 @ 09:49:25

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Viewed: 11 times | Downloaded: 9 times

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Workflow

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Workflow Provenance Challenge 1 workflow part A -- mockup version (v1)

Created: 21/06/10 @ 09:43:55 | Last updated: 21/06/10 @ 09:47:28

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow

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Workflow Provenance Challenge 1 workflow -- mockup version (v1)

Created: 28/05/10 @ 07:14:35

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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simulates the image processing for the PC1 workflow using beanshell that simply track test strings an image is a pair (header, image) specified as a list of depth 1: [header,image] so each processor with image input takes an input list. Note that the processors are designed to operate on single images (except softmean that operates on a list of images), but because the initial input is a list of images, all are processed by implicit iteration.

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Workflow

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Workflow myFirstLinearDataflow (v1)

Created: 12/04/10 @ 09:32:13

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Viewed: 39 times | Downloaded: 17 times

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Workflow

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Workflow example of a 2-deep nested workflow (v1)

Created: 11/09/09 @ 00:44:53

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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used for testing provenance as well as experimenting with Scufl2 specfications

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Workflow

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Workflow Workflow for provenance testing -- example 1 (v1)

Created: 10/09/09 @ 12:15:02

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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this simply includes a few beanshells and is used for testing our provenance capture and query algorithms

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Workflow

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Workflow EBI_InterProScan for Taverna 2 (v2)

Created: 26/01/10 @ 14:46:07 | Last updated: 26/01/10 @ 14:46:08

Credits: User Stian Soiland-Reyes User Paolo User Katy Wolstencroft User Hamish McWilliam

Attributions: Workflow EBI InterproScan T2 Workflow EBI_InterProScan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the sig...

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Viewed: 175 times | Downloaded: 122 times

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Workflow

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Workflow KEGG Gene IDs to KEGG Pathways (v1)

Created: 04/06/09 @ 18:41:36 | Last updated: 07/01/10 @ 15:31:37

Credits: User Paolo

Attributions: Workflow Pathways and Gene annotations for QTL region

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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this is a simplified version of Paul's workflow (linked?) that is designed to be provenance-friendly

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Workflow

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Workflow Taverna rendering of the PAN-STARRS workflow for Provenance Challenge 3 (v1)

Created: 30/04/09 @ 16:32:17

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Example inputs: CSVRootPath = /Users/paolo/Documents/myGRID/OPM/PC3/SampleData/J062941 JobID:J062941  

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Workflow

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Workflow EBI_InterProScan for Taverna 2 (v2)

Created: 26/01/10 @ 14:45:46 | Last updated: 24/11/10 @ 10:04:09

Credits: User Stian Soiland-Reyes User Katy Wolstencroft User Paolo User Hamish McWilliam

Attributions: Workflow EBI_InterProScan for Taverna 2 Workflow EBI InterproScan T2 Workflow EBI_InterProScan Workflow EBI InterProScan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to t...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 394 times | Downloaded: 197 times

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