Gb User: Franck Tanoh Admin_badge

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Name: Franck Tanoh

Joined: Wednesday 01 August 2007 @ 15:21:20 (GMT)

Last seen: Thursday 17 March 2011 @ 10:26:23 (GMT)

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Location: United Kingdom

26 Friends

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7 Groups (member)

27 Workflows

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Franck Tanoh has been credited 35 times

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Blob An Introduction to Taverna and myExperiment - Background

Created: 04/08/08 @ 17:49:10

Credits: User Paul Fisher User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint presentation

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Blob A Taverna Users Guide

Created: 04/08/08 @ 17:40:21

Credits: User Paul Fisher User Katy Wolstencroft User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint presentation

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Blob Taverna tutorial

Created: 03/03/08 @ 11:05:24 | Last updated: 03/03/08 @ 11:20:45

Credits: User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A step by step guide on how to build workflows in Taverna. This tutorial is designed for any background. i welcome your comments and suggestions.

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Blob Taverna tutorial

Created: 03/03/08 @ 11:15:00 | Last updated: 03/03/08 @ 11:16:11

Credits: User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A step by step guide on how to build workflows in Taverna.  Biology oriented but  should be ok with other background with a 'tiny'  Biology knowledge.  I welcome your comments and suggestions.

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Workflow

Taverna 2

Original Uploader

Workflow Fetch today's Johnny Wander Comic (v1)

Created: 12/09/11 @ 18:17:05 | Last updated: 12/09/11 @ 18:22:14

Credits: User tpacurtis User Franck Tanoh

Attributions: Workflow Fetch today's xkcd comic

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Use the local java plugins and some filtering operations to fetch the comic strip image from http://www.johnnywander.com/ Based on the FetchDailyDilbert workflow & Fetch today's XKDC comic

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Workflow

Taverna 2

Original Uploader

Workflow GBSeq test (v1)

Created: 12/07/11 @ 14:08:40 | Last updated: 12/07/11 @ 14:08:41

Credits: User Franck Tanoh

Attributions: Workflow GBSeq test

License: Creative Commons Attribution 3.0 Unported License

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This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

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Workflow

Taverna 2

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Workflow Retrieve sequence in EMBL format (v1)

Created: 12/07/11 @ 14:01:17 | Last updated: 12/07/11 @ 14:01:18

Credits: User Franck Tanoh

Attributions: Workflow Retrieve sequence in EMBL format

License: Creative Commons Attribution 3.0 Unported License

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This workflow retrieves a sequence associated with its features in embl format

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Workflow

Taverna 2

Original Uploader

Workflow GBSeq test (v1)

Created: 04/07/10 @ 18:36:58 | Last updated: 04/07/10 @ 18:37:00

Credits: User Franck Tanoh

License: Creative Commons Attribution 3.0 Unported License

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This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

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Workflow

Taverna 2

Original Uploader

Workflow Retrieve sequence in EMBL format (v1)

Created: 04/07/10 @ 18:39:07 | Last updated: 04/07/10 @ 18:39:09

Credits: User Franck Tanoh

License: Creative Commons Attribution 3.0 Unported License

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This workflow retrieves a sequence associated with its features in embl format

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Workflow

Taverna 2

Original Uploader

Workflow EntrezGeneId_to_GOFunction (v1)

Created: 13/05/10 @ 12:07:48 | Last updated: 13/05/10 @ 12:09:51

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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The workflow takes a list of Entrez gene ids and returns the corresponding GO function definitions. Example value: 1306 486 4712 108 9912 7639 23786

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Workflow

Taverna 1

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Workflow get_enzymes_by_gene (v1)

Created: 08/10/08 @ 16:37:24

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Retrieve all the EC numbers which are assigned to a given gene Input example: eco:b0002

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Workflow

Taverna 1

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Workflow get_enzymes_by_compound (v1)

Created: 08/10/08 @ 16:30:58

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Retrieve all enzymes which have a link to a given compound id Input example: cpd:C00345

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Workflow

Taverna 1

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Workflow get_elements_by_pathway (v1)

Created: 08/10/08 @ 16:25:59

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Retrieve all objects on specified pathway get_elements_by_pathway Input example: path:bsu00010

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Workflow

Taverna 1

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Workflow get_element_relations_by_pathway (v1)

Created: 08/10/08 @ 16:19:51

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Retrieve all objects and relations on specified pathway Input example: path:bsu00010

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Workflow

Taverna 1

Original Uploader

Workflow get_drugs_by_pathways (v1)

Created: 07/10/08 @ 17:05:11

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Retrieves all drugs on the specified pathway. input example: path:map07025 ; path:eco00020

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Workflow

Taverna 1

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Workflow get_compounds_by_reaction (v1)

Created: 07/10/08 @ 16:58:38

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Retrieve all compounds which have a link to a given reaction_id Example on input: rn:R00100

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Workflow

Taverna 1

Original Uploader

Workflow get_compounds_by_pathway (v1)

Created: 07/10/08 @ 16:49:18

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Retrieves all compounds on the specified pathway Example of input: path:eco00020

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Workflow

Taverna 1

Original Uploader

Workflow get_best_best_neighbors_by_gene (v1)

Created: 02/10/08 @ 13:41:05

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Search the best-best neighbor of a gene in all organisms. Example of input: gene_id: eco:b0002 offset: 1 limit: 10

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Workflow

Taverna 1

Original Uploader

Workflow color_pathway_by_objects (v1)

Created: 01/10/08 @ 17:03:41 | Last updated: 01/10/08 @ 17:06:10

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Color given objects on a pathway map with specified colors and return the URL of the colored image. In the KEGG pathway maps, a gene or enzyme is represented by a rectangle and a compound is shown as a small circle. Example of input: pathway_id: path:eco00260 object_list: (to add as list) eco:b0514 eco:b2913 fg_color: (to add as list) blue orange bg_color: (to add as list) red orange

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Workflow

Taverna 1

Original Uploader

Workflow color_pathway_by_elements (v2)

Created: 30/09/08 @ 18:13:47 | Last updated: 01/10/08 @ 17:11:38

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Color the objects (rectangles and circles on a pathway map) corresponding to the given 'element_id_list' with the specified colors and return the URL of the colored image. Example of inputs: pathway_id: path:bsu00010 element_list: (to add as list) 78 79 fg_color_list:(to add as list) red blue bg_color_list: (to add as list) green yellow

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Workflow

Taverna 1

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Workflow btit (v1)

Created: 30/09/08 @ 17:44:11 | Last updated: 30/09/08 @ 17:46:34

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Retrieve definitions of given database entries available on GenomeNet database. Example of input: hsa:1798 mmu:13478

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Workflow

Taverna 1

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Workflow binfo (v1)

Created: 30/09/08 @ 14:30:08 | Last updated: 30/09/08 @ 14:31:27

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Show the version information of a specificied database.  Example of input: "gb"  for Genbank database "sp" for swissprot database "emb" for embl database

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Workflow

Taverna 1

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Workflow bget (v1)

Created: 29/09/08 @ 13:58:00

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Retrieve database entries specified by a list of entry_id. Number of entry_id retrieves at a time is restricted up to 100 Example of input: eco:b0002 hin:tRNA-Cys-1

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Workflow

Taverna 1

Original Uploader

Workflow bfind (v1)

Created: 29/09/08 @ 13:21:12 | Last updated: 29/09/08 @ 13:23:39

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Used for searching entries by keywords. User needs to specify a database from those which are supported by DBGET system before keywords. List of databases available at : http://www.genome.jp/dbget/ Example of input parameter: gb E-cadherin human

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Workflow

Taverna 1

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Workflow bconv (v1)

Created: 29/09/08 @ 12:13:41 | Last updated: 29/09/08 @ 12:29:01

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Converts external IDs to KEGG IDs.External database:  NCBI GI, NCBI GeneID, GenBank , UniGene , OMIM. Database prefix: ncbi-gi:, ncbi-geneid:, genbank: ,unigene: , uniprot: , omim: Example of input parameter: ncbi-gi:10047090 ncbi-geneid:14751

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Workflow

Taverna 1

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Workflow Retrieve_abstract_from_Medline (v1)

Created: 17/09/08 @ 15:22:56 | Last updated: 17/09/08 @ 15:24:22

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow retrieves Medline Abstracts given PMIDs (PubMed id) You can use: 9879 as input example to test this workflow

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Workflow

Taverna 1

Original Uploader

Workflow BLASTP with simplified results returned (v1)

Created: 22/07/08 @ 15:53:06 | Last updated: 22/07/08 @ 16:29:55

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers.

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Workflow

Taverna 1

Original Uploader

Workflow Get weather information (v3)

Created: 17/06/08 @ 16:25:49 | Last updated: 20/06/08 @ 14:48:32

Credits: User Franck Tanoh User Stian Soiland-Reyes

Attributions: Workflow Get weather information Workflow Get cities by country name

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure. The default value Stian's home country.

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Workflow

Taverna 1

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Workflow getUPIForSequence workflow (v2)

Created: 06/06/08 @ 09:59:59 | Last updated: 06/06/08 @ 10:07:06

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Given a sequence retrieve the UPI (UniProt Archive (UniParc)) identifier.

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Workflow

Taverna 1

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Workflow GBSeq test (v2)

Created: 05/03/08 @ 14:15:35 | Last updated: 31/03/08 @ 15:55:09

Credits: User Franck Tanoh

License: Creative Commons Attribution 3.0 Unported License

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This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

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Workflow

Taverna 1

Original Uploader

Workflow Get weather information (v1)

Created: 15/02/08 @ 23:17:07 | Last updated: 15/02/08 @ 23:21:19

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure. The default value is my home town. To find out any supported city run the 'Get cities by country name' workflow

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Workflow

Taverna 1

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Workflow Get cities by country name (v1)

Created: 15/02/08 @ 23:20:04

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Get all the cities supported by the 'Get Weather info' workflow.... just enter your country name as input.

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Workflow

Taverna 1

Original Uploader

Workflow Retrieve sequence in EMBL format (v3)

Created: 17/06/09 @ 16:51:32

Credits: User Franck Tanoh User Tomoinn User Stuart Owen

License: Creative Commons Attribution 3.0 Unported License

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This workflow retrieves a sequence associated with its features in embl format

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Workflow

Taverna 2

Original Uploader

Workflow Get 7 day weather information for selected zip codes. (v1)

Created: 14/09/11 @ 05:46:28 | Last updated: 14/09/11 @ 05:46:25

Credits: User Gstalloch User Franck Tanoh

Attributions: Workflow Get weather information

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure. The default value is my home town. To find out any supported city run the 'Get cities by country name' workflow

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