Log in
Register
Give us Feedback
Invite
User: Glatard
 |
Name: Glatard Joined: Tuesday 04 March 2008 @ 14:08:05 (GMT) Last seen: Monday 18 April 2011 @ 18:08:16 (GMT) Email (public): glatard [at] creatis.insa-lyon.fr Website: http://www.creatis.insa-lyon.fr/~glatard Location: Lyon, France |
Glatard has been credited 14 times Glatard has an average rating of: 4.0 / 5 (2 ratings in total) for their items |
I am using Taverna to design workflows running on the EGEE grid. EGEE jobs are wrapped into Web-Services and can then be embedded in a Taverna workflow. During my PhD, I studied workflows for medical image analysis applications and we really enjoyed Scufl's iteration strategies that allow to define complex data patterns with simple operators. Because of performance limitations of Taverna (in particular concerning pipelining among the services), we developped MOTEUR, a Scufl enactor dedicated to the execution of Taverna workflows on EGEE. We also faced some limitations of the semantics of the 'dot product' and we extended it.
Other contact details:
Not specifiedInterests:
Not specifiedField/Industry: Not specified
Occupation/Role(s): researcher
Organisation(s):
CREATIS-LRMN
Note: some items may not be visible to you, due to viewing permissions.
File
|
Uploader: |
Created: 28/01/09 @ 17:31:10
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
To be used with VBrowser as input of workflow http://www.myexperiment.org/workflows/640
File type: Binary data Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 29 times | Downloaded: 9 times This File has no tags! |
 View
 Download
|
File
|
Uploader: |
Created: 28/01/09 @ 17:23:01
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
To be used with the VBrowser as inputs of workflow http://www.myexperiment.org/workflows/639
File type: Binary data Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 11 times | Downloaded: 10 times This File has no tags! |
View
Download
|
Workflow
|
Original Uploader |
Created: 18/04/11 @ 18:27:50 | Last updated: 18/04/11 @ 18:27:51
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow implements MRI simulation with SIMRI (http://simri.eu). It is developped by the Virtual Imaging Platform (http://www.creatis.insa-lyon.fr/vip).
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 9 times | Downloaded: 7 times Tags (2): |
View
Download (v1)
|
Workflow
|
Original Uploader |
Created: 18/04/11 @ 18:25:34 | Last updated: 18/04/11 @ 18:25:35
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow implements Positron Emission Tomography simulation with PET-Sorteo http://sorteo.cermep.fr/. It is developped by the Virtual Imaging Platform (http://www.creatis.insa-lyon.fr/vip).
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 4 times | Downloaded: 7 times Tags (2): |
View
Download (v1)
|
Workflow
|
Original Uploader |
Created: 18/04/11 @ 18:15:48
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Workflow implementing ultrasound simulation using FIELD-II http://server.electro.dtu.dk/personal/jaj/field/. Developped by the Virtual Imaging Platform (http://www.creatis.insa-lyon.fr/vip).
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 6 times | Downloaded: 34 times Tags (1): |
View
Download (v1)
|
Workflow
|
Original Uploader |
Created: 18/04/11 @ 18:19:37 | Last updated: 18/04/11 @ 18:19:55
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow implements computed tomography (CT) simulation with the Sindbad software. It is developped by the Virtual Imaging Platform (http://www.creatis.insa-lyon.fr/vip).
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 6 times | Downloaded: 4 times Tags (1): |
View
Download (v1)
|
Workflow
|
Original Uploader |
Created: 20/11/09 @ 11:12:43 | Last updated: 30/11/09 @ 09:35:38
Credits:
Attributions:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
http://amc-app1.amc.sara.nl/twiki/bin/view/
Workflow-based DNA sequence analysis on the Dutch Life Science Grid.
This workflow is based on http://www.myexperiment.org/workflows/840 , the last component (Blast analysis) is replaced by Blat analysis
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 84 times | Downloaded: 22 times Tags (7): |
View
Download (v2)
|
Workflow
|
Original Uploader |
Created: 23/05/09 @ 18:05:22 | Last updated: 13/08/09 @ 17:14:25
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Application description is found in the following papers:
Jan S et al, GATE: a simulation toolkit for PET and SPECT. Phys. Med. Biol. 49 (2004) 4543-4561
Sarrut D. and Guigues L. Region-oriented CT image representation for reducing computing time of Monte Carlo simulations. Med Phys. 35(4):1452-1463. 2008
Two components (fgate and merge, merge being disabled in experiments conducted for the heteropar and JGC papers) are run on the EGEE grid. A quite elaborated workflow is ma...
Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 149 times | Downloaded: 34 times Tags (2): |
View
Download (v3)
|
Workflow
|
Original Uploader |
Created: 28/01/09 @ 17:25:34 | Last updated: 28/01/09 @ 17:36:07
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow is to be run on results obtained from this one (couldn't manage to find a clean solution for merging those two in Scufl).
Processor "feat_group":
1. builds the experiment intput (design) file from template and input parameters
2. calls feat FSL
Processor "roi" reads activation maps produced by feat_group, extract a region of interest and compute the mean, stdev, max and min activation within it.
Here is a sample input in VBrowser's XML dialect.
Below is...
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 65 times | Downloaded: 29 times This Workflow has no tags! |
View
Download (v1)
|
Workflow
|
Original Uploader |
Created: 03/02/09 @ 15:30:15
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
No description
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 95 times | Downloaded: 29 times Tags (1): |
View
Download (v2)
|
Workflow
|
Original Uploader |
Created: 24/10/08 @ 14:30:25 | Last updated: 31/10/08 @ 12:13:23
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This is a sample workflow submitting jobs to the EGEE grid using the Generic Application Service Wrapper (GASW). The job submission service has to be installed locally.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 96 times | Downloaded: 37 times Tags (3): |
View
Download (v1)
|
Workflow
|
Original Uploader |
Created: 18/03/08 @ 16:40:42 | Last updated: 19/05/08 @ 15:56:35
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This is an attempt to implement the feat application from the fsl fMRI package www.fmrib.ox.ac.uk/fsl/fsl/whatsnew.html into a Scufl workflow. Details are still being polished but the general structure is here. The main problem that we have with such workflows concerns data provenance. Each of the services is typically iterated on hundreds of data sets and keeping track of the produced files is a pain.
Rating: 4.0 / 5 (2 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 231 times | Downloaded: 2 times Tags (1): |
View
|
Workflow
|
Original Uploader |
Created: 10/07/09 @ 14:31:27 | Last updated: 30/11/09 @ 09:37:38
Credits:
License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
http://amc-app1.amc.sara.nl/twiki/bin/view/
Workflow-based DNA sequence analysis on the Dutch Life Science Grid,
presented as Application Showcase at the NBIC Conference 2009, Lunteren, The Netherlands, 17 & 18 March 2009.
http://www.biomedgrid.it/programme
may 15th 2009. Hands on workflow: grid-enabled medical imaging (Johan Montagnat – Tristan Glatard)
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 335 times | Downloaded: 46 times Tags (5): |
View
Download (v1)
|
Workflow
|
Original Uploader |
Created: 23/05/09 @ 17:49:08 | Last updated: 23/05/09 @ 17:52:04
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Applications details in the following paper:
Ketan Maheshwari, Tristan Glatard, Joel Schaerer, Bertrand Delhay, Sorina Camarasu, Patrick Clarysse, Johan Montagnat. "Towards Production-level Cardiac Image Analysis with Grids" in Proceedings of the HealthGrid'09, Berlin, 28-30 june 2009
The 3 green boxes are run on the EGEE grid. Addional Beanshells have been added to transfer results from EGEE Storage Elements to a web server, to allow for better interactivity.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 47 times | Downloaded: 26 times Tags (1): |
View
Download (v1)
|
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
