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Name: Katy Wolstencroft

Joined: Friday 20 July 2007 18:31:02 (UTC)

Last seen: Friday 09 March 2018 10:20:10 (UTC)

Email (public): k.j.wolstencroft [at] liacs.leidenuniv.nl

Website: http://www.mygrid.org.uk

Location: Leiden, Netherlands

48 Friends

16 Groups (admin)

22 Groups (member)

23 Files

2 Packs

28 Workflows

3 Favourites

Katy Wolstencroft has been credited 99 times

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workflows, ontologies semantic web, bioinformatics

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71?size=60x60 Nl Katy Wolstencroft
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Blob Annotating Experimental Data

Created: 2015-12-03 08:31:02

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a tutorial about annotating experimental data with RightField

File type: PowerPoint 2007 presentation

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Blob Geo File for Annotation

Created: 2015-12-03 08:23:05

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an excel file to use in the RightField exercises in the BioSB Data Integration Course 2015

File type: application/excel

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Blob Taverna Tutorial Data Integration NL 2015

Created: 2015-12-02 10:41:00 | Last updated: 2015-12-02 10:43:03

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial introduces you to using the Taverna workbench and shows you how you can use the Open PHACTS REST API to construct workflows over Open PHACTS services

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71?size=60x60 Nl Katy Wolstencroft
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Blob Cranfield Msc Intro to Taverna

Created: 2013-01-09 16:43:00

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial give a brief introduction to designing and running workflows in Taverna, using a variety of different types of services and reusing workflows from myExperiment

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71?size=60x60 Nl Katy Wolstencroft
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Blob Workflow Assignment Instructions

Created: 2012-09-05 08:20:34

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint presentation

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Blob Bonn Tutorial REST services

Created: 2012-09-03 19:34:12

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a brief introduction to using REST servicces through Taverna

File type: PowerPoint presentation

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Blob Bonn Tutorial Different Service Types

Created: 2012-09-03 19:32:32

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thie tutorial introduces you to using different types of services with Taverna - e.g. asynchronous, biomart and soaplab

File type: PowerPoint presentation

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Blob Bonn Taverna Shims

Created: 2012-08-30 14:18:06

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to finding, using and designing Shim services for Taverna workflows

File type: PowerPoint presentation

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71?size=60x60 Nl Katy Wolstencroft
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Blob Bonn Taverna WF Engine

Created: 2012-08-30 14:15:51

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to using the advanced features of the Taverna workflow engine, such as iterations, looping etc

File type: PowerPoint presentation

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71?size=60x60 Nl Katy Wolstencroft
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Blob Bonn Taverna Intro Tutorial

Created: 2012-08-30 14:11:55

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to designing, combining and sharing workflows with Taverna and myExperiment

File type: PowerPoint presentation

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71?size=60x60 Nl Katy Wolstencroft
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Blob Bozeman Advanced

Created: 2012-08-23 20:29:25

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint presentation

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Blob Bozeman Tutorial

Created: 2012-08-22 09:59:37

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial is an introduction to designing and using Taverna workflows and myExperiment. It was created for the workshop "Making Sense of Biological Systems:Using Knowledge Mining to Improve and Validate Models of Living Systems", at Montana State University Aug 2012

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71?size=60x60 Nl Katy Wolstencroft
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Blob Getting Started with Taverna - an NGS tutorial

Created: 2012-05-23 14:53:24 | Last updated: 2012-05-30 08:48:19

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial is an introduction to using Taverna, using an example from Chip-Seq analysis

File type: PowerPoint presentation

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71?size=60x60 Nl Katy Wolstencroft
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Blob Taverna Tutorial Chip-Seq Downstream analysis

Created: 2012-01-17 13:26:09

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a tutorial to introduce the use of Taverna for Next Gen sequence analysis

File type: PowerPoint presentation

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Blob Advanced exercises for Next Gen Taverna tutorial

Created: 2012-01-16 16:56:02 | Last updated: 2012-01-17 16:00:23

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

These exercises highlight some of the more advanced features of the Taverna engine, for example, looping, iteration and retries

File type: PowerPoint presentation

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71?size=60x60 Nl Katy Wolstencroft
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Blob Galaxy Chip-Seq Gene List

Created: 2012-01-12 12:50:30 | Last updated: 2012-01-12 12:50:31

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of genes associated with Chip-Seq peaks. It is part of a Galaxy-Taverna Next Gen Sequencing tutorial

File type: Excel workbook

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Blob BioVel Taverna Tutorial

Created: 2011-12-05 11:07:46 | Last updated: 2011-12-05 11:07:49

Credits: User Katy Wolstencroft User Alan Williams User Robert Haines User Biomobst

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial gives an introduction to Taverna, myExperiment and BioCatalogue, using a case study from ecological niche modelling.

File type: PowerPoint presentation

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71?size=60x60 Nl Katy Wolstencroft
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Blob EraSysBio Summer School Taverna Tutorial

Created: 2009-07-24 21:54:27

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial is an introduction to Taverna and myExperiment

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Blob Exploring Taverna 2.1 Beta 1

Created: 2009-06-08 19:29:23 | Last updated: 2009-06-08 19:29:52

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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71?size=60x60 Nl Katy Wolstencroft
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Blob Exploring Taverna 2

Created: 2009-05-28 09:08:37

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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71?size=60x60 Nl Katy Wolstencroft
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Blob Introduction to Taverna 1

Created: 2009-05-28 09:07:45

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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71?size=60x60 Nl Katy Wolstencroft
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Blob An Introduction to Taverna Tutorial

Created: 2008-06-17 14:17:20

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Blob The Data Playground: An Intuitive Workflow Specifica...

Created: 2008-06-02 14:46:40

Credits: User Katy Wolstencroft User Andrew Gibson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a copy of the paper we wrote for the 3rd International Conference on e-Science and Grid Computing 2007 (http://www.escience2007.org/index.asp). It won the Best Paper award!  

File type: Adobe PDF

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