User: Adam Woznica

Name: Adam Woznica

Joined: Friday 23 April 2010 15:34:43 (UTC)

Last seen: Tuesday 20 March 2012 21:47:52 (UTC)

Email (public): adam.woznica [at] unige.ch

Website: http://cui.unige.ch/~woznica/

Location: Geneva, Switzerland

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University of Geneva

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Input data and background knowledge used in the KUP ...

Created: 2011-05-25 16:39:48

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Compressed RM repository directory containing input data and background knowledge used in the KUP data mining challenge (http://tunedit.org/challenge/ON)

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A sample visualization produced by the R functions f...

Created: 2011-05-23 13:17:49 | Last updated: 2011-05-24 20:30:25

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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A sample visualization produced by the R functions f...

Created: 2011-05-23 13:17:10 | Last updated: 2011-05-24 20:30:47

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Plots fibrosis data (R script)

Created: 2011-05-23 13:02:34 | Last updated: 2011-05-24 20:27:58

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Plots a (modified) heatmap of the fibrosis gene data describing different genes used in various studies on fibrosis. The input dataset is prepared in the "prepare-fibrosis-data" RM workflow. Possible values in the input data are: 1 (a gene is Up regulated), -1 (Down regulated), 0 (Unmodified) and -2 (missing value). It requires the "gplots" R package.

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Plots an attribute similarity matrix on gene data (R...

Created: 2011-05-23 13:01:44 | Last updated: 2011-05-25 15:46:10

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Plots an attribute similarity matrix computed from the provided data frame. The input dataset is prepared in the "prepare-gene-correlation" RM workflow and is assumed to contain genes as rows, and gene functions and locations as columns. In the visualized matrix columns correspond to gene locations and rows correspond to gene functions. The supported types of attribute similarities are: the covariance, the Hamming distance, and a modified Hamming distance that focuses on columns wit...

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R library

Created: 2011-05-23 12:50:59 | Last updated: 2011-05-24 20:27:32

Credits: Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

R library used by other R scripts.