User: Simon Jupp

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Name: Simon Jupp

Joined: Saturday 21 July 2007 12:34:16 (UTC)

Last seen: Wednesday 11 January 2012 14:32:21 (UTC)

Email (public): simon.jupp [at] manchester.ac.uk

Website: http://www.cs.man.ac.uk/~sjupp

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Workflow miRNA GFF to entrez gene (1)

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This workflow reads a GFF file of miRNA cooridinates and uses BioMart to search human ensemble genes for the gene that codes for the miRNA. The workflow returns a list of miRNAid, chromosome, start, stop, strand, entrez gene id, gene name, gene strand. Example input file here: ftp://mirbase.org/pub/mirbase/CURRENT/genomes/hsa.gff

Created: 2011-01-26 | Last updated: 2012-01-11

Workflow dreseden-term-extraction1 (1)

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Created: 2007-11-22

Credits: User Simon Jupp

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