Gb User: BioCo Consultants

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Name: BioCo Consultants

Joined: Sunday 22 April 2012 12:59:26 (UTC)

Last seen: Monday 23 July 2012 23:26:03 (UTC)

Email (public): joseph.m.mullen [at] gmail.com

Website: http://www.students.ncl.ac.uk/w.singh/

Location: Newcastle Upon Tyne, United Kingdom

BioCo Consultants has been credited 5 times

BioCo Consultants has an average rating of:

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We are all going to beat team B !!!


Other contact details:

Not specified

Interests:

Providing solutions to bioinformatic problems

Field/Industry: Bioinformatics

Occupation/Role(s): Computational Systems Biology

Organisation(s):

Newcastle University

 

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Workflow extractGInumber (1)

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 This workflow uses regex pattern to compare the identity percentage of each hits against the input sequnece and return the whole information of the hits and the GI number of them (if they including the GI number as a sub information)   inputfileURL:  the location of the Gi number   outputText  : the list of all the hits and the GI number of them

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: User BioCo Consultants

Workflow filterDifferenceInLists (1)

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 This workflow output a list of the protein or any string hits in the first list but not in the second list.    output : output file location com : comparision protein list our : interested protein list out1: output as a string

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: User BioCo Consultants

Workflow ConcatStringTogether (1)

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 This workflow is as simple as you can imagine! It can be used to remove the information tags in a fasta file and concat the sequence together   fastaURL :  the input fasta reads file location seqURL : the outcome sequence file location wholeSeq : the output sequence as an entire string

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: User BioCo Consultants

Workflow generateWholeSeqAnnotation (1)

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 This work flow is used for genereating all the known genes together to annotate a whole or a large region of genome sequence.   outputfilrURL:  the location of the output file Ginumber:   the input gi gene number wholeGenomeSeq:    the whold sequence annotation information output:    the output of genbank text

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: User BioCo Consultants

Workflow Get top blastx hit of a list of contigs (1)

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This workflow takes a contigs.fasta file , gets all the ORF's present in it , runs blastx on each ORF, gets the FASTA file of the top blastX hit and its GI number.

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: User BioCo Consultants

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