<?xml version="1.0" encoding="UTF-8"?>
<workflow uri="http://www.myexperiment.org/workflow.xml?id=75" resource="http://www.myexperiment.org/workflows/75" version="1">
  <id>75</id>
  <title>BioAID_ProteinToDiseases</title>
  <description>This workflow was based on BioAID_DiseaseDiscovery, changes: expects only one protein name, adds protein synonyms).

This workflow finds diseases relevant to the query string via the following steps:


&lt;ol&gt;
&lt;li value="1"&gt;A user query: a single protein name&lt;/li&gt;
&lt;li value="2"&gt;Add synonyms (service courtesy of Martijn Scheumie, Erasmus University Rotterdam)&lt;/li&gt;
&lt;li value="3"&gt;Retrieve documents: finds relevant documents (abstract+title) based on query&lt;/li&gt;
&lt;li value="4"&gt;Discover proteins: extract proteins discovered in the set of relevant abstracts&lt;/li&gt;
&lt;/ol&gt;

5. Link proteins to disease contained in the OMIM disease database.</description>
  <type uri="http://www.myexperiment.org/type.xml?id=1" resource="http://www.myexperiment.org/content_types/1">Taverna 1</type>
  <uploader resource="http://www.myexperiment.org/users/18" uri="http://www.myexperiment.org/user.xml?id=18">Marco Roos</uploader>
  <created-at>Wed Nov 14 12:47:57 UTC 2007</created-at>
  <preview>http://www.myexperiment.org/workflows/75/versions/1/previews/full</preview>
  <svg>http://www.myexperiment.org/workflows/75/versions/1/previews/svg</svg>
  <license-type uri="http://www.myexperiment.org/license.xml?id=2" resource="http://www.myexperiment.org/licenses/2">by-sa</license-type>
  <content-uri>http://www.myexperiment.org/workflows/75/download/bioaid_proteintodiseases_16160.xml</content-uri>
  <content-type>application/vnd.taverna.scufl+xml</content-type>
  <tags>
    <tag uri="http://www.myexperiment.org/tag.xml?id=562" resource="http://www.myexperiment.org/tags/562">text_mining</tag>
    <tag uri="http://www.myexperiment.org/tag.xml?id=402" resource="http://www.myexperiment.org/tags/402">protein</tag>
    <tag uri="http://www.myexperiment.org/tag.xml?id=119" resource="http://www.myexperiment.org/tags/119">disease</tag>
    <tag uri="http://www.myexperiment.org/tag.xml?id=38" resource="http://www.myexperiment.org/tags/38">BioAID</tag>
    <tag uri="http://www.myexperiment.org/tag.xml?id=5" resource="http://www.myexperiment.org/tags/5">AIDA</tag>
    <tag uri="http://www.myexperiment.org/tag.xml?id=522" resource="http://www.myexperiment.org/tags/522">VL-e</tag>
    <tag uri="http://www.myexperiment.org/tag.xml?id=611" resource="http://www.myexperiment.org/tags/611">biorange_nl</tag>
    <tag uri="http://www.myexperiment.org/tag.xml?id=612" resource="http://www.myexperiment.org/tags/612">text_mining_network</tag>
  </tags>
</workflow>

