scufl_graph cluster_Discover_proteinsDiscover_proteins Discover_proteins cluster_Discover_proteinsDiscover_entitiesDiscover_entities Discover_entities cluster_Discover_proteinsDiscover_entitiessources Workflow Inputs cluster_Discover_proteinsDiscover_entitiessinks Workflow Outputs cluster_Discover_proteinsExtract_proteinsExtract_proteins Extract_proteins cluster_Discover_proteinsExtract_proteinssources Workflow Inputs cluster_Discover_proteinsExtract_proteinssinks Workflow Outputs cluster_Discover_proteinssources Workflow Inputs cluster_Discover_proteinssinks Workflow Outputs cluster_Retrieve_documentsRetrieve_documents Retrieve_documents cluster_Retrieve_documentsRetrieveRetrieve Retrieve cluster_Retrieve_documentsRetrievesources Workflow Inputs cluster_Retrieve_documentsRetrievesinks Workflow Outputs cluster_Retrieve_documentsBiooptimize_queryBiooptimize_query Biooptimize_query cluster_Retrieve_documentsBiooptimize_querysources Workflow Inputs cluster_Retrieve_documentsBiooptimize_querysinks Workflow Outputs cluster_Retrieve_documentssources Workflow Inputs cluster_Retrieve_documentssinks Workflow Outputs cluster_sources Workflow Inputs cluster_sinks Workflow Outputs maxHits maxHits Retrieve_documentsWORKFLOWINTERNALSOURCE_maxHits maxHits maxHits->Retrieve_documentsWORKFLOWINTERNALSOURCE_maxHits Document_index Document_index Retrieve_documentsWORKFLOWINTERNALSOURCE_document_index document_index Document_index->Retrieve_documentsWORKFLOWINTERNALSOURCE_document_index search_field search_field Retrieve_documentsWORKFLOWINTERNALSOURCE_search_field search_field search_field->Retrieve_documentsWORKFLOWINTERNALSOURCE_search_field Flatten_list Flatten_list Remove_xml_tag Remove_xml_tag Flatten_list->Remove_xml_tag WORKFLOWINTERNALSINK_discovered_proteins_xml discovered_proteins_xml Flatten_list->WORKFLOWINTERNALSINK_discovered_proteins_xml WORKFLOWINTERNALSINK_discovered_proteins discovered_proteins Remove_xml_tag->WORKFLOWINTERNALSINK_discovered_proteins Discover_proteinsprelearned_genomics_model prelearned_genomics_model Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_learned_model learned_model Discover_proteinsprelearned_genomics_model->Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_learned_model Discover_proteinsDiscover_entitiesDefault_output_type Default_output_type Discover_proteinsDiscover_entitiesNErecognize NErecognize Discover_proteinsDiscover_entitiesDefault_output_type->Discover_proteinsDiscover_entitiesNErecognize Discover_proteinsDiscover_entitiesDefault_input_type Default_input_type Discover_proteinsDiscover_entitiesDefault_input_type->Discover_proteinsDiscover_entitiesNErecognize Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSINK_discovered_entities discovered_entities Discover_proteinsDiscover_entitiesNErecognize->Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSINK_discovered_entities Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCECONTROL Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_input_from_lucene input_from_lucene Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_input_from_lucene->Discover_proteinsDiscover_entitiesNErecognize Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_learned_model->Discover_proteinsDiscover_entitiesNErecognize Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSINKCONTROL Discover_proteinsExtract_proteinsWORKFLOWINTERNALSOURCE_input_string input_string Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSINK_discovered_entities->Discover_proteinsExtract_proteinsWORKFLOWINTERNALSOURCE_input_string Discover_proteinsExtract_proteinsfilter_protein_molecule_regexp filter_protein_molecule_regexp Discover_proteinsExtract_proteinsFilter_protein_molecules Filter_protein_molecules Discover_proteinsExtract_proteinsfilter_protein_molecule_regexp->Discover_proteinsExtract_proteinsFilter_protein_molecules Discover_proteinsExtract_proteinsRemove_duplicate_strings Remove_duplicate_strings Discover_proteinsExtract_proteinsFilter_protein_molecules->Discover_proteinsExtract_proteinsRemove_duplicate_strings Discover_proteinsExtract_proteinsWORKFLOWINTERNALSINK_protein_molecule_list protein_molecule_list Discover_proteinsExtract_proteinsRemove_duplicate_strings->Discover_proteinsExtract_proteinsWORKFLOWINTERNALSINK_protein_molecule_list Discover_proteinsExtract_proteinssplitOn_protein_molecule_regexp splitOn_protein_molecule_regexp Discover_proteinsExtract_proteinsSplitOn_protein_molecule SplitOn_protein_molecule Discover_proteinsExtract_proteinssplitOn_protein_molecule_regexp->Discover_proteinsExtract_proteinsSplitOn_protein_molecule Discover_proteinsExtract_proteinsSplitOn_protein_molecule->Discover_proteinsExtract_proteinsFilter_protein_molecules Discover_proteinsExtract_proteinsWORKFLOWINTERNALSOURCECONTROL Discover_proteinsExtract_proteinsWORKFLOWINTERNALSOURCE_input_string->Discover_proteinsExtract_proteinsSplitOn_protein_molecule Discover_proteinsExtract_proteinsWORKFLOWINTERNALSINKCONTROL Discover_proteinsWORKFLOWINTERNALSINK_discovered_proteins discovered_proteins Discover_proteinsExtract_proteinsWORKFLOWINTERNALSINK_protein_molecule_list->Discover_proteinsWORKFLOWINTERNALSINK_discovered_proteins Discover_proteinsWORKFLOWINTERNALSOURCECONTROL Discover_proteinsWORKFLOWINTERNALSOURCE_documents_from_lucene documents_from_lucene Discover_proteinsWORKFLOWINTERNALSOURCE_documents_from_lucene->Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_input_from_lucene Discover_proteinsWORKFLOWINTERNALSINKCONTROL Discover_proteinsWORKFLOWINTERNALSINK_discovered_proteins->Flatten_list Retrieve_documentsRetrievesearch search Retrieve_documentsRetrieveWORKFLOWINTERNALSINK_relevant_documents relevant_documents Retrieve_documentsRetrievesearch->Retrieve_documentsRetrieveWORKFLOWINTERNALSINK_relevant_documents Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCECONTROL Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_queryString queryString Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_queryString->Retrieve_documentsRetrievesearch Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_document_index document_index Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_document_index->Retrieve_documentsRetrievesearch Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_search_field search_field Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_search_field->Retrieve_documentsRetrievesearch Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_maxHits maxHits Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_maxHits->Retrieve_documentsRetrievesearch Retrieve_documentsRetrieveWORKFLOWINTERNALSINKCONTROL Retrieve_documentsWORKFLOWINTERNALSINK_relevant_documents relevant_documents Retrieve_documentsRetrieveWORKFLOWINTERNALSINK_relevant_documents->Retrieve_documentsWORKFLOWINTERNALSINK_relevant_documents Retrieve_documentsBiooptimize_queryLucene_year_priorities Lucene_year_priorities Retrieve_documentsBiooptimize_queryPrioritise_lucene_query Prioritise_lucene_query Retrieve_documentsBiooptimize_queryLucene_year_priorities->Retrieve_documentsBiooptimize_queryPrioritise_lucene_query Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSINK_optimized_lucene_query optimized_lucene_query Retrieve_documentsBiooptimize_queryPrioritise_lucene_query->Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSINK_optimized_lucene_query Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSOURCECONTROL Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSOURCE_query_string query_string Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSOURCE_query_string->Retrieve_documentsBiooptimize_queryPrioritise_lucene_query Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSINKCONTROL Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSINK_optimized_lucene_query->Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_queryString Retrieve_documentsWORKFLOWINTERNALSOURCECONTROL Retrieve_documentsWORKFLOWINTERNALSOURCE_query_string query_string Retrieve_documentsWORKFLOWINTERNALSOURCE_query_string->Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSOURCE_query_string Retrieve_documentsWORKFLOWINTERNALSOURCE_document_index->Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_document_index Retrieve_documentsWORKFLOWINTERNALSOURCE_search_field->Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_search_field Retrieve_documentsWORKFLOWINTERNALSOURCE_maxHits->Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_maxHits Retrieve_documentsWORKFLOWINTERNALSINKCONTROL Retrieve_documentsWORKFLOWINTERNALSINK_relevant_documents->Discover_proteinsWORKFLOWINTERNALSOURCE_documents_from_lucene WORKFLOWINTERNALSINK_relevant_documents relevant_documents 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