scufl_graph cluster_Flatten_and_make_uniqueFlatten_and_make_unique Flatten_and_make_unique cluster_Flatten_and_make_uniquesources Workflow Inputs cluster_Flatten_and_make_uniquesinks Workflow Outputs cluster_Retrieve_documentsRetrieve_documents Retrieve_documents cluster_Retrieve_documentsBiooptimize_queryBiooptimize_query Biooptimize_query cluster_Retrieve_documentsBiooptimize_querysources Workflow Inputs cluster_Retrieve_documentsBiooptimize_querysinks Workflow Outputs cluster_Retrieve_documentsRetrieveRetrieve Retrieve cluster_Retrieve_documentsRetrievesources Workflow Inputs cluster_Retrieve_documentsRetrievesinks Workflow Outputs cluster_Retrieve_documentssources Workflow Inputs cluster_Retrieve_documentssinks Workflow Outputs cluster_Discover_proteinsDiscover_proteins Discover_proteins cluster_Discover_proteinsExtract_proteinsExtract_proteins Extract_proteins cluster_Discover_proteinsExtract_proteinssources Workflow Inputs cluster_Discover_proteinsExtract_proteinssinks Workflow Outputs cluster_Discover_proteinsDiscover_entitiesDiscover_entities Discover_entities cluster_Discover_proteinsDiscover_entitiessources Workflow Inputs cluster_Discover_proteinsDiscover_entitiessinks Workflow Outputs cluster_Discover_proteinssources Workflow Inputs cluster_Discover_proteinssinks Workflow Outputs cluster_Link_proteins_to_diseasesLink_proteins_to_diseases Link_proteins_to_diseases cluster_Link_proteins_to_diseasessources Workflow Inputs cluster_Link_proteins_to_diseasessinks Workflow Outputs cluster_sources Workflow Inputs cluster_sinks Workflow Outputs search_field search_field Retrieve_documentsWORKFLOWINTERNALSOURCE_search_field search_field search_field->Retrieve_documentsWORKFLOWINTERNALSOURCE_search_field Document_index Document_index Retrieve_documentsWORKFLOWINTERNALSOURCE_document_index document_index Document_index->Retrieve_documentsWORKFLOWINTERNALSOURCE_document_index maxHits maxHits Retrieve_documentsWORKFLOWINTERNALSOURCE_maxHits maxHits maxHits->Retrieve_documentsWORKFLOWINTERNALSOURCE_maxHits Flatten_and_make_uniqueRemove_duplicate_strings Remove_duplicate_strings Flatten_and_make_uniqueWORKFLOWINTERNALSINK_flattened_unique_output flattened_unique_output Flatten_and_make_uniqueRemove_duplicate_strings->Flatten_and_make_uniqueWORKFLOWINTERNALSINK_flattened_unique_output Flatten_and_make_uniqueFlatten_list Flatten_list Flatten_and_make_uniqueFlatten_list->Flatten_and_make_uniqueRemove_duplicate_strings Flatten_and_make_uniqueWORKFLOWINTERNALSOURCECONTROL Flatten_and_make_uniqueWORKFLOWINTERNALSOURCE_input input Flatten_and_make_uniqueWORKFLOWINTERNALSOURCE_input->Flatten_and_make_uniqueFlatten_list Flatten_and_make_uniqueWORKFLOWINTERNALSINKCONTROL Flatten_list Flatten_list Flatten_and_make_uniqueWORKFLOWINTERNALSINK_flattened_unique_output->Flatten_list Remove_xml_tag Remove_xml_tag Link_proteins_to_diseasesWORKFLOWINTERNALSOURCE_keyword keyword Remove_xml_tag->Link_proteins_to_diseasesWORKFLOWINTERNALSOURCE_keyword Retrieve_documentsBiooptimize_queryLucene_year_priorities Lucene_year_priorities Retrieve_documentsBiooptimize_queryPrioritise_lucene_query Prioritise_lucene_query Retrieve_documentsBiooptimize_queryLucene_year_priorities->Retrieve_documentsBiooptimize_queryPrioritise_lucene_query Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSINK_optimized_lucene_query optimized_lucene_query Retrieve_documentsBiooptimize_queryPrioritise_lucene_query->Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSINK_optimized_lucene_query Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSOURCECONTROL Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSOURCE_query_string query_string Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSOURCE_query_string->Retrieve_documentsBiooptimize_queryPrioritise_lucene_query Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSINKCONTROL Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_queryString queryString Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSINK_optimized_lucene_query->Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_queryString Retrieve_documentsRetrievesearch search Retrieve_documentsRetrieveWORKFLOWINTERNALSINK_relevant_documents relevant_documents Retrieve_documentsRetrievesearch->Retrieve_documentsRetrieveWORKFLOWINTERNALSINK_relevant_documents Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCECONTROL Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_queryString->Retrieve_documentsRetrievesearch Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_document_index document_index Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_document_index->Retrieve_documentsRetrievesearch Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_search_field search_field Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_search_field->Retrieve_documentsRetrievesearch Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_maxHits maxHits Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_maxHits->Retrieve_documentsRetrievesearch Retrieve_documentsRetrieveWORKFLOWINTERNALSINKCONTROL Retrieve_documentsWORKFLOWINTERNALSINK_relevant_documents relevant_documents Retrieve_documentsRetrieveWORKFLOWINTERNALSINK_relevant_documents->Retrieve_documentsWORKFLOWINTERNALSINK_relevant_documents Retrieve_documentsWORKFLOWINTERNALSOURCECONTROL Retrieve_documentsWORKFLOWINTERNALSOURCE_query_string query_string Retrieve_documentsWORKFLOWINTERNALSOURCE_query_string->Retrieve_documentsBiooptimize_queryWORKFLOWINTERNALSOURCE_query_string Retrieve_documentsWORKFLOWINTERNALSOURCE_document_index->Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_document_index Retrieve_documentsWORKFLOWINTERNALSOURCE_search_field->Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_search_field Retrieve_documentsWORKFLOWINTERNALSOURCE_maxHits->Retrieve_documentsRetrieveWORKFLOWINTERNALSOURCE_maxHits Retrieve_documentsWORKFLOWINTERNALSINKCONTROL Discover_proteinsWORKFLOWINTERNALSOURCE_documents_from_lucene documents_from_lucene Retrieve_documentsWORKFLOWINTERNALSINK_relevant_documents->Discover_proteinsWORKFLOWINTERNALSOURCE_documents_from_lucene Discover_proteinsprelearned_genomics_model prelearned_genomics_model Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_learned_model learned_model Discover_proteinsprelearned_genomics_model->Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_learned_model Discover_proteinsExtract_proteinssplitOn_protein_molecule_regexp splitOn_protein_molecule_regexp Discover_proteinsExtract_proteinsSplitOn_protein_molecule SplitOn_protein_molecule Discover_proteinsExtract_proteinssplitOn_protein_molecule_regexp->Discover_proteinsExtract_proteinsSplitOn_protein_molecule Discover_proteinsExtract_proteinsfilter_protein_molecule_regexp filter_protein_molecule_regexp Discover_proteinsExtract_proteinsFilter_protein_molecules Filter_protein_molecules Discover_proteinsExtract_proteinsfilter_protein_molecule_regexp->Discover_proteinsExtract_proteinsFilter_protein_molecules Discover_proteinsExtract_proteinsRemove_duplicate_strings Remove_duplicate_strings Discover_proteinsExtract_proteinsWORKFLOWINTERNALSINK_protein_molecule_list protein_molecule_list Discover_proteinsExtract_proteinsRemove_duplicate_strings->Discover_proteinsExtract_proteinsWORKFLOWINTERNALSINK_protein_molecule_list Discover_proteinsExtract_proteinsFilter_protein_molecules->Discover_proteinsExtract_proteinsRemove_duplicate_strings Discover_proteinsExtract_proteinsSplitOn_protein_molecule->Discover_proteinsExtract_proteinsFilter_protein_molecules Discover_proteinsExtract_proteinsWORKFLOWINTERNALSOURCECONTROL Discover_proteinsExtract_proteinsWORKFLOWINTERNALSOURCE_input_string input_string Discover_proteinsExtract_proteinsWORKFLOWINTERNALSOURCE_input_string->Discover_proteinsExtract_proteinsSplitOn_protein_molecule Discover_proteinsExtract_proteinsWORKFLOWINTERNALSINKCONTROL Discover_proteinsWORKFLOWINTERNALSINK_discovered_proteins discovered_proteins Discover_proteinsExtract_proteinsWORKFLOWINTERNALSINK_protein_molecule_list->Discover_proteinsWORKFLOWINTERNALSINK_discovered_proteins Discover_proteinsDiscover_entitiesDefault_output_type Default_output_type Discover_proteinsDiscover_entitiesNErecognize NErecognize Discover_proteinsDiscover_entitiesDefault_output_type->Discover_proteinsDiscover_entitiesNErecognize Discover_proteinsDiscover_entitiesDefault_input_type Default_input_type Discover_proteinsDiscover_entitiesDefault_input_type->Discover_proteinsDiscover_entitiesNErecognize Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSINK_discovered_entities discovered_entities Discover_proteinsDiscover_entitiesNErecognize->Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSINK_discovered_entities Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCECONTROL Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_input_from_lucene input_from_lucene Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_input_from_lucene->Discover_proteinsDiscover_entitiesNErecognize Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_learned_model->Discover_proteinsDiscover_entitiesNErecognize Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSINKCONTROL Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSINK_discovered_entities->Discover_proteinsExtract_proteinsWORKFLOWINTERNALSOURCE_input_string Discover_proteinsWORKFLOWINTERNALSOURCECONTROL Discover_proteinsWORKFLOWINTERNALSOURCE_documents_from_lucene->Discover_proteinsDiscover_entitiesWORKFLOWINTERNALSOURCE_input_from_lucene Discover_proteinsWORKFLOWINTERNALSINKCONTROL Discover_proteinsWORKFLOWINTERNALSINK_discovered_proteins->Remove_xml_tag Link_proteins_to_diseasessplit_OMIM_regexp split_OMIM_regexp Link_proteins_to_diseasesSplit_OMIM_results Split_OMIM_results Link_proteins_to_diseasessplit_OMIM_regexp->Link_proteins_to_diseasesSplit_OMIM_results Link_proteins_to_diseasesfilter_disease_regexp filter_disease_regexp Link_proteins_to_diseasesExtract_diseases_from_OMIM Extract_diseases_from_OMIM Link_proteins_to_diseasesfilter_disease_regexp->Link_proteins_to_diseasesExtract_diseases_from_OMIM Link_proteins_to_diseasesRemove_duplicate_strings Remove_duplicate_strings Link_proteins_to_diseasesWORKFLOWINTERNALSINK_OMIM_disease_label OMIM_disease_label Link_proteins_to_diseasesRemove_duplicate_strings->Link_proteins_to_diseasesWORKFLOWINTERNALSINK_OMIM_disease_label Link_proteins_to_diseasesSplit_OMIM_results->Link_proteins_to_diseasesExtract_diseases_from_OMIM Link_proteins_to_diseaseslabel_OMIM_disease label_OMIM_disease Link_proteins_to_diseasesExtract_diseases_from_OMIM->Link_proteins_to_diseaseslabel_OMIM_disease Link_proteins_to_diseasesFlatten_list Flatten_list Link_proteins_to_diseasesFlatten_list->Link_proteins_to_diseasesRemove_duplicate_strings Link_proteins_to_diseaseslabel_OMIM_disease->Link_proteins_to_diseasesFlatten_list Link_proteins_to_diseasessearch search Link_proteins_to_diseasessearch->Link_proteins_to_diseasesSplit_OMIM_results Link_proteins_to_diseasesWORKFLOWINTERNALSOURCECONTROL Link_proteins_to_diseasesWORKFLOWINTERNALSOURCE_keyword->Link_proteins_to_diseasessearch Link_proteins_to_diseasesWORKFLOWINTERNALSINKCONTROL Link_proteins_to_diseasesWORKFLOWINTERNALSINK_OMIM_disease_label->Flatten_and_make_uniqueWORKFLOWINTERNALSOURCE_input Add_protein_synonyms Add_protein_synonyms Add_protein_synonyms->Retrieve_documentsWORKFLOWINTERNALSOURCE_query_string WORKFLOWINTERNALSINK_discovered_diseases discovered_diseases Flatten_list->WORKFLOWINTERNALSINK_discovered_diseases WORKFLOWINTERNALSOURCECONTROL WORKFLOWINTERNALSOURCE_input_protein input_protein WORKFLOWINTERNALSOURCE_input_protein->Add_protein_synonyms WORKFLOWINTERNALSINKCONTROL